Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32730 265 / 2e-81 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1) AT1G04810 263 / 6e-81 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G314300 [exp] 269 / 4e-83 AT2G32730 1617 / 0.0 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1) Potri.017G054400 [exp] 257 / 9e-79 AT2G32730 1642 / 0.0 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016681 [exp] 263 / 6e-81 AT2G32730 1602 / 0.0 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1) Lus10007140 [exp] 263 / 8e-81 AT2G32730 1672 / 0.0 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01851 [poplar] [flax] PC_rep Proteasome/cyclosome repeat
Representative CDS sequence Show only first row Show all	>Potri.004G183750.1 pacid=42795260 polypeptide=Potri.004G183750.1.p locus=Potri.004G183750 ID=Potri.004G183750.1.v4.1 annot-version=v4.1 ATGCTCTTGGATGAACCCGGAGGCGTGGCAAGCATATTGGAAAAACTTTTACGTTCAAAAAATAAGGACAGAGCTTTGGTGGCATTTCAAATAGCCTTTG ATCTTGTGGAGAATGAGGACCAGACTTTTCTCTTATATGTCAGAGACCTCTTTTCAATGTGTCAGCCTTCAGATTCTACTCAAAATGATCATGCAACAGA TCCACGTGAAGGAATGTATGCTGAGAGGTCATATCTCCTTATTCCGAAGACAATTAAGCAGCCTATTGAGAAAAGTGGTAGTGTCTGCCATAATGCAACT TTATATGCAAATGCAATAATGCATGCTGGAACAGCTGTTGGTACATTCGTCCGGGAGAATCTGGATTTGTTGAGAAAGCGGGGAAATTGGGCCCAGTTCA GCGCAATAGCTGGACTTGGTGTTATTTACAGAGACAACAGAGAACAGCTGCAGCTGCAGCAGGGTGAGTCACAAATGTCACCTTATGTTTTTGAAAGTCC AAGTGGTGTCAGCTGTATTGCATACACAAAAGGTGGTGCACTCTGTGCTGTGGATCTCTACTATGCTAACCACGGGGAGGAAATCAAGCAATGTATTCGT GATAGCCTTCGTGGTACAAATGTCGAGGTTGTTCAACATGGTGCATGCTTAGGTCTTGGATTGGCAGCTCTAGGAACGGCTGGTGAAAATATCTATGATG ACATCAAAAATGTGTTGCATGCTGATAGTGCTGTGGCTGGAGAAGCTGCTGGCCTGCAAGCGATATACTTGCTTGTGCTCGTCAGACACAACATGAGAAG ATTACTAGTTTATGGAAGAGAAGAAGAAGCAGACACCAATTGA
AA sequence Show only first row Show all	>Potri.004G183750.1 pacid=42795260 polypeptide=Potri.004G183750.1.p locus=Potri.004G183750 ID=Potri.004G183750.1.v4.1 annot-version=v4.1 MLLDEPGGVASILEKLLRSKNKDRALVAFQIAFDLVENEDQTFLLYVRDLFSMCQPSDSTQNDHATDPREGMYAERSYLLIPKTIKQPIEKSGSVCHNAT LYANAIMHAGTAVGTFVRENLDLLRKRGNWAQFSAIAGLGVIYRDNREQLQLQQGESQMSPYVFESPSGVSCIAYTKGGALCAVDLYYANHGEEIKQCIR DSLRGTNVEVVQHGACLGLGLAALGTAGENIYDDIKNVLHADSAVAGEAAGLQAIYLLVLVRHNMRRLLVYGREEEADTN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32730			26S proteasome regulatory comp...		Potri.004G183750 [exp]	0	1
AT3G15370		ATHEXPALPHA1.24...	expansin 12 (.1)		Potri.001G401700 [exp]	2.23	0.6347
AT2G04220			Plant protein of unknown funct...		Potri.001G467500 [exp]	7.21	0.5029
AT5G28780			PIF1 helicase (.1)		Potri.009G007400 [exp]	21.63	0.5030
AT4G29250			HXXXD-type acyl-transferase fa...		Potri.018G032700 [exp]	39.23	0.4835
AT3G19650			cyclin-related (.1)		Potri.001G295000 [exp]	74.59	0.4752
					Potri.001G293700 [exp]	83.90	0.4187
					Potri.006G047250 [exp]	89.88	0.4296
AT4G18770	MYB	ATMYB98	myb domain protein 98 (.1)		Potri.015G077700 [exp]	92.24	0.4397
					Potri.007G075066 [exp]	108.70	0.4147
AT5G49665			Zinc finger (C3HC4-type RING f...		Potri.002G107902 [exp]	143.49	0.4277

Compare expression of checked genes

Potri.004G183750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.