Plant FIBer expression Database

Potri.004G184100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G22470 538 / 0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1)
AT2G31320 120 / 7e-29 ATPARP2 poly(ADP-ribose) polymerase 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G143900
[exp]
615 / 0 AT5G22470 1120 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1)
Potri.002G041300
[exp]
75 / 4e-14 AT2G31320 1382 / 0.0 poly(ADP-ribose) polymerase 2 (.1)
Potri.014G128200
[exp]
52 / 7e-07 AT4G02390 827 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1)
Potri.014G128000
[exp]
49 / 7e-06 AT4G02390 587 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019539
[exp]
527 / 0 AT5G22470 957 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1)
Lus10043383
[exp]
510 / 2e-174 AT5G22470 1079 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1)
Lus10033871
[exp]
130 / 5e-32 AT2G31320 1372 / 0.0 poly(ADP-ribose) polymerase 2 (.1)
Lus10007882
[exp]
55 / 1e-07 AT4G02390 758 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1)
Lus10030363
[exp]
50 / 2e-06 AT4G02390 571 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0084 ADP-ribosyl PF00644 PARP Poly(ADP-ribose) polymerase catalytic domain
CL0084 PF02877 PARP_reg Poly(ADP-ribose) polymerase, regulatory domain
Representative CDS sequence
>Potri.004G184100.1 pacid=42796048 polypeptide=Potri.004G184100.1.p locus=Potri.004G184100 ID=Potri.004G184100.1.v4.1 annot-version=v4.1
ATGGAAGCAGATGATGTTTCTGATCTTTTTGTGGAGGGAAAAGGAATTCCATGGGACAAACAAGATCCCGAGGCTCCCAAGTCAATTTCAGCAGAACGAA
TTATGTCTGTGCATTGCAGCTCAAACTATATATATGGCAAGAGAGGAGTCTACAAAGACACTAAATTGCAGGAACGTGGTGGGCGGATACTTGAGAAAGA
TGGGATAGTATATTGTATCATGCAATTGATCACGGTACTGGAGAGCAACTTGCATTTGTACTACAAGAAAGGGAAAGGAAATGCTATTAAAGAGTTTGGC
AGTCTCTTTGAGGAACTCACTGGAAATGAGTTCGAGCCATGGGAAAGAGAAAAGAAGTTTAAGAAAAAGCGACTCAGTTTCTACCCAATAGACATGGATG
ATGGGGTCGATGCGAGACATGGAGGGCTCAGACTTAGGCAGCTAGGAGTTGCAGCCGTGCACCGCAGACTTGAACCCAAAATTGCTTATTTTATGAAAAT
CTTGTGCAGTCGGGAGATATACAGGTATGCCATGATGGAGAAGGGTTGTGACTCTCCTGATTTGCCAATGGGGATGCTTTCAAATTTTCACATGGAAAGA
TGCGAGGACGTCCTGCTTTGGTTTGTAGAAGCGGGGAAATCAACTAAAGAAACAGGACAGAAGGCAGAGGCTGGTGCAGCTGCATTTGAGACTGTTCGAG
ACATAAATGTGGCCCCACGCCTTATAGGAGACATGTCCGGCTCAGCCCTCGATGATCCATTGTCGGATAGATACATGAATTGGGCTGCTCAGTTCAGAGT
TGGAGACATTGACTATGGAGTATCAGTTGAGAATATTTTTCCTGTTGAACCAAGTGCCTGTCCTCCTTTGGTTGAGATAAAGAAGTTGCCAAACAAAGTA
GTGCTATGGTGTGGCACTCGAAGCTCAAACATGTTAAGGCATTTGCAAAAAGGGTTTCTGCCGTCAGTCTGTTCTCTTCCAGTCCCCGGCGATTTTTGTT
CTGATGCTGCTGCAGAAGCTGGTAGGTATGGTTTTACTGCAGTAGATAGGCCAGAAGGATTTTTAGCTCTAGCTGTTGCTTCTCTTGGGGATCAGGTCAT
TAAAGTTGAAAGTCCACTGGAGACAGGATACAAAGTCATGTTAGAGAGAAAGACAACAGATGAATCTGAACATTTTCTATGGAAGGATGACATCAAAGTT
CCTTGTGGTCGCTTGATTCCATCAGTGCATAAAGACAGCCCCCTTGAATACAATGAATACGCTATCTATGATCCGAAACAGCTTTTCTTGTACTGGCATA
AGGCACAATCACTTTATGGAGGTGAAATATATCTTGCTACAGGGAGCCATTCTCTTCTCTGA
AA sequence
>Potri.004G184100.1 pacid=42796048 polypeptide=Potri.004G184100.1.p locus=Potri.004G184100 ID=Potri.004G184100.1.v4.1 annot-version=v4.1
MEADDVSDLFVEGKGIPWDKQDPEAPKSISAERIMSVHCSSNYIYGKRGVYKDTKLQERGGRILEKDGIVYCIMQLITVLESNLHLYYKKGKGNAIKEFG
SLFEELTGNEFEPWEREKKFKKKRLSFYPIDMDDGVDARHGGLRLRQLGVAAVHRRLEPKIAYFMKILCSREIYRYAMMEKGCDSPDLPMGMLSNFHMER
CEDVLLWFVEAGKSTKETGQKAEAGAAAFETVRDINVAPRLIGDMSGSALDDPLSDRYMNWAAQFRVGDIDYGVSVENIFPVEPSACPPLVEIKKLPNKV
VLWCGTRSSNMLRHLQKGFLPSVCSLPVPGDFCSDAAAEAGRYGFTAVDRPEGFLALAVASLGDQVIKVESPLETGYKVMLERKTTDESEHFLWKDDIKV
PCGRLIPSVHKDSPLEYNEYAIYDPKQLFLYWHKAQSLYGGEIYLATGSHSLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G22470 NAD+ ADP-ribosyltransferases;N... Potri.004G184100
[exp]
0 1
AT5G01030 Protein of unknown function (D... Potri.016G105500
[exp]
2.00 0.9879
AT4G13640 GARP UNE16 unfertilized embryo sac 16, Ho... Potri.006G081001
[exp]
4.00 0.9862
AT5G66110 HIPP27 heavy metal associated isopren... Potri.005G110400
[exp]
6.48 0.9867
Potri.016G032550
[exp]
7.74 0.9844
AT4G10570 UBP9 ubiquitin-specific protease 9 ... Potri.001G449000
[exp]
8.12 0.9788
AT2G17380 AP19 associated protein 19 (.1) Potri.002G001800
[exp]
13.03 0.9484
AT3G29590 AT5MAT HXXXD-type acyl-transferase fa... Potri.009G019700
[exp]
13.34 0.9474
Potri.014G170000
[exp]
14.83 0.9610
AT5G63830 HIT-type Zinc finger family pr... Potri.001G085800
[exp]
16.12 0.9584
AT2G20560 DNAJ heat shock family protein... Potri.011G057601
[exp]
18.49 0.9663

Potri.004G184100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.