Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67360 400 / 1e-130 ARA12 Subtilase family protein (.1) AT2G04160 396 / 7e-129 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT3G14067 389 / 3e-126 Subtilase family protein (.1) AT5G59810 386 / 6e-125 ATSBT5.4 Subtilase family protein (.1) AT1G32960 375 / 6e-121 ATSBT3.3 Subtilase family protein (.1) AT4G10550 371 / 1e-119 Subtilase family protein (.1.2.3) AT5G51750 370 / 5e-119 ATSBT1.3 subtilase 1.3 (.1) AT1G20160 368 / 1e-118 ATSBT5.2 Subtilisin-like serine endopeptidase family protein (.1.2) AT4G10520 367 / 1e-117 Subtilase family protein (.1) AT4G10540 366 / 2e-117 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G144500 [exp] 901 / 0 AT5G59810 508 / 9e-170 Subtilase family protein (.1) Potri.011G146300 [exp] 427 / 3e-141 AT4G10550 546 / 0.0 Subtilase family protein (.1.2.3) Potri.001G455800 [exp] 413 / 2e-135 AT4G10550 558 / 0.0 Subtilase family protein (.1.2.3) Potri.001G002200 [exp] 403 / 2e-131 AT4G26330 891 / 0.0 UNFERTILIZED EMBRYO SAC 17, Subtilisin-like serine endopeptidase family protein (.1) Potri.004G161400 [exp] 400 / 2e-130 AT4G10550 659 / 0.0 Subtilase family protein (.1.2.3) Potri.005G067200 [exp] 395 / 8e-129 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.012G131500 [exp] 392 / 3e-127 AT5G51750 1102 / 0.0 subtilase 1.3 (.1) Potri.011G050000 [exp] 392 / 4e-127 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050300 [exp] 389 / 6e-126 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007083 [exp] 392 / 6e-127 AT5G45650 956 / 0.0 subtilase family protein (.1) Lus10023048 [exp] 390 / 1e-126 AT5G59810 762 / 0.0 Subtilase family protein (.1) Lus10011089 [exp] 388 / 3e-126 AT5G67360 1108 / 0.0 Subtilase family protein (.1) Lus10020458 [exp] 388 / 2e-125 AT5G45650 940 / 0.0 subtilase family protein (.1) Lus10004682 [exp] 381 / 7e-125 AT5G59190 555 / 0.0 subtilase family protein (.1) Lus10019285 [exp] 384 / 5e-124 AT5G67360 1105 / 0.0 Subtilase family protein (.1) Lus10011537 [exp] 383 / 8e-124 AT5G67360 1117 / 0.0 Subtilase family protein (.1) Lus10038774 [exp] 382 / 2e-123 AT5G59810 839 / 0.0 Subtilase family protein (.1) Lus10039085 [exp] 381 / 6e-123 AT5G59810 827 / 0.0 Subtilase family protein (.1) Lus10013154 [exp] 380 / 6e-123 AT3G14067 915 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Potri.004G184600.1 pacid=42796587 polypeptide=Potri.004G184600.1.p locus=Potri.004G184600 ID=Potri.004G184600.1.v4.1 annot-version=v4.1 ATGGGACTTAATCCTCTCTGTGGGAATAACCAAGGGCCTGTGACTTCGTCAGCGTCCGATGTTATTGTTGGTGTCATTGATGGAGGATCTTGGCCTGAGT CAGAGAGCTTCAGCGATACAGGCTTAGGCGCTGTGCCCATAAAATTCAAGGGAGAATGTGTTGCTGGTGAAAATTTTACATCAGATAACTGCAACTGGTT CTACTTCAAAGGATTTGAAGCCGAAAATGGGCCTTTAGAAGATATTGGTGGCACTTTCTTCCGATCAGCACGAGACAGTGATGGCCATGGATCCCACACT TCCTCAACTATAGCTGGAGCTATATTGCCTAATGTTAGCTTATCTGGGATGGCCAGAGGCACTGCAAGAGGTGGTGCATCATATGCCAGACTTGCCATCT ACAAGGCTTGTTGGTTTAACCTGTGCAGTGACGCTGATGTTGTTTCTGCCATGGACGATGCAATCAATGATGGAGTCGATATCCTATCTCTTTCCCTTGC CCTTGACCCTCCCCAGCCAATTTACTTTACAAATGCAATTTCTGTTGGAGCTTTCCATGCATTCAAGAAAGGAATAGTTGTGTCGTGTTCAGCAGGGAAC TCATTTTCCCCAAAGACTGCAGCTAATGTTGCTCCTTGGATACTCACTGTTGCTGCTAGTTCTCTGGACCGGGAATTTGGCTCAAACATTTATCTTGGAA ATTCACAAGTTTTGAAGGTGATTTTTACTAATGCCATCATGATTTTTATCTCGGACTTTCTAAAAATTGATGTGCTTTCAGGGACAATTAATACTGTAGA CCCTGCCAAGATTGTTGTGTGTACAATTGAGGTTCTCACCGATGTTCGAAGACAAAAGGCCGTAGCTGAACAACTAGGTGAAGGTGCCGGAATGAAATTG ATCGATCCAATTGTCAAAGAAGTTGGCTTTCAGTTTGTAATACCAGGCACATTAATAGGTCAAGAAGAAGCACAACAGCTTCAGGCATATATGCAGACAC AAAGAGTTTTGAACACAAAACCTGCACCAAAAGTGACCGTGTTTTCTTCCCAAGGACCAAATGTTATTACTCCGGGTATTATCAAGCCAGATATTACAGC ACCTGGTTTGAATATATTGGCAGCATGGTCTTCAATATCAACTGTTGGCACGGGTGGGCGACGAGTCAACTACAACATAATCTCTGGAACCTCCATGTCT TGCCCACATGTTTCAGCGGCTGCAGCAATCTTAAAATCTTACAGACCTTCTTGGAGTCCAGCAGCTATAAAGTCTGCAATAATGACAACCGCTACACCTT TTGACTTCGGATCCGGACACATAAATCCACTAGCAGCATTGAACCCAGGACTAATTTACCGTTTTGATTCCAGTGACGTCATTGATTTTCTCTGCAGTAT TGGTGCAAGACCTGCACAATTGAAAATCCTCACAGGACAGACAACTTATTGCCAAAATCCAACTAAACAATCATCTGACTTTAACAACCCCTCGATTGGT GTGTCCAACATGAAAGGAAGCATACCAGTTTATAGAACAGTTACTTATTATGGTACAGGACCGACTGCTTATGTTGTGAAGGCTGATGATCCAGCTGGTG TTCAAGTTACAGTTACACCTGCCCAGCTCAAGTTCACAAAGACAGGCGAAAATATGTCTTTCAGGATAGATTTTAAGCCTCTGAAGACTAGTGATGGAAA TTTTGTGTTTGGAGCTCTGACATGGAGCAATGGTGTTCACAAGGTTAGGAGACCGATTGCTCTTCAAGTGCTTTCATTGTAG
AA sequence Show only first row Show all	>Potri.004G184600.1 pacid=42796587 polypeptide=Potri.004G184600.1.p locus=Potri.004G184600 ID=Potri.004G184600.1.v4.1 annot-version=v4.1 MGLNPLCGNNQGPVTSSASDVIVGVIDGGSWPESESFSDTGLGAVPIKFKGECVAGENFTSDNCNWFYFKGFEAENGPLEDIGGTFFRSARDSDGHGSHT SSTIAGAILPNVSLSGMARGTARGGASYARLAIYKACWFNLCSDADVVSAMDDAINDGVDILSLSLALDPPQPIYFTNAISVGAFHAFKKGIVVSCSAGN SFSPKTAANVAPWILTVAASSLDREFGSNIYLGNSQVLKVIFTNAIMIFISDFLKIDVLSGTINTVDPAKIVVCTIEVLTDVRRQKAVAEQLGEGAGMKL IDPIVKEVGFQFVIPGTLIGQEEAQQLQAYMQTQRVLNTKPAPKVTVFSSQGPNVITPGIIKPDITAPGLNILAAWSSISTVGTGGRRVNYNIISGTSMS CPHVSAAAAILKSYRPSWSPAAIKSAIMTTATPFDFGSGHINPLAALNPGLIYRFDSSDVIDFLCSIGARPAQLKILTGQTTYCQNPTKQSSDFNNPSIG VSNMKGSIPVYRTVTYYGTGPTAYVVKADDPAGVQVTVTPAQLKFTKTGENMSFRIDFKPLKTSDGNFVFGALTWSNGVHKVRRPIALQVLSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67360		ARA12	Subtilase family protein (.1)		Potri.004G184600 [exp]	0	1
					Potri.004G184650 [exp]	1.00	0.9903
AT5G01750			Protein of unknown function (D...		Potri.016G131100 [exp]	3.16	0.9741
AT1G51120	AP2_ERF		AP2/B3 transcription factor fa...		Potri.006G186301 [exp]	13.19	0.9740
					Potri.006G271901 [exp]	13.41	0.9713
AT5G06370			NC domain-containing protein-r...		Potri.013G043100 [exp]	18.13	0.9730
AT2G47020			Peptide chain release factor 1...		Potri.002G188200 [exp]	21.07	0.9429
AT3G14470			NB-ARC domain-containing disea...		Potri.006G275800 [exp]	21.90	0.9708
					Potri.017G109401 [exp]	24.49	0.9632
					Potri.006G271692 [exp]	26.24	0.9680
AT5G16990			Zinc-binding dehydrogenase fam...		Potri.017G002600 [exp]	26.73	0.9466

Compare expression of checked genes

Potri.004G184600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.