Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07350 298 / 3e-101 Protein of unknown function (DUF506) (.1) AT3G25240 244 / 4e-80 Protein of unknown function (DUF506) (.1) AT1G12030 138 / 6e-39 Protein of unknown function (DUF506) (.1) AT1G62420 137 / 9e-39 Protein of unknown function (DUF506) (.1) AT4G14620 132 / 5e-36 Protein of unknown function (DUF506) (.1) AT3G22970 131 / 1e-35 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT4G32480 120 / 5e-32 Protein of unknown function (DUF506) (.1) AT2G38820 120 / 6e-32 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT2G39650 110 / 3e-28 Protein of unknown function (DUF506) (.1) AT2G20670 109 / 7e-28 Protein of unknown function (DUF506) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G144600 [exp] 434 / 6e-155 AT3G07350 271 / 1e-90 Protein of unknown function (DUF506) (.1) Potri.011G023301 [exp] 152 / 9e-44 AT1G62420 195 / 1e-60 Protein of unknown function (DUF506) (.1) Potri.004G001400 [exp] 140 / 2e-39 AT1G62420 209 / 2e-66 Protein of unknown function (DUF506) (.1) Potri.008G159800 [exp] 137 / 2e-37 AT3G22970 350 / 3e-119 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G216900 [exp] 133 / 4e-36 AT3G22970 320 / 2e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.002G046300 [exp] 131 / 2e-35 AT3G22970 322 / 5e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.010G080600 [exp] 130 / 6e-35 AT3G22970 371 / 3e-127 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.013G129900 [exp] 127 / 1e-34 AT4G32480 307 / 6e-105 Protein of unknown function (DUF506) (.1) Potri.011G053300 [exp] 125 / 8e-34 AT4G32480 253 / 3e-83 Protein of unknown function (DUF506) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003174 [exp] 288 / 4e-97 AT3G07350 253 / 2e-83 Protein of unknown function (DUF506) (.1) Lus10002335 [exp] 196 / 3e-63 AT3G07350 177 / 7e-56 Protein of unknown function (DUF506) (.1) Lus10003258 [exp] 146 / 8e-42 AT1G62420 179 / 2e-54 Protein of unknown function (DUF506) (.1) Lus10035594 [exp] 146 / 9e-42 AT1G62420 179 / 3e-54 Protein of unknown function (DUF506) (.1) Lus10018754 [exp] 135 / 1e-36 AT2G38820 319 / 6e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10024840 [exp] 133 / 3e-36 AT3G22970 324 / 4e-109 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10014718 [exp] 127 / 5e-34 AT3G22970 327 / 3e-110 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10003087 [exp] 126 / 2e-33 AT3G22970 318 / 7e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10033683 [exp] 124 / 3e-33 AT4G32480 264 / 9e-88 Protein of unknown function (DUF506) (.1) Lus10006634 [exp] 125 / 5e-33 AT3G22970 367 / 2e-125 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04720 [poplar] [flax] PDDEXK_6 PDDEXK-like family of unknown function
Representative CDS sequence Show only first row Show all	>Potri.004G184700.1 pacid=42796596 polypeptide=Potri.004G184700.1.p locus=Potri.004G184700 ID=Potri.004G184700.1.v4.1 annot-version=v4.1 ATGTCAGGTTTTGCAAGGGCGAAACGAGTTACTGACCCCCTCGACGATAAAGCTAAAGCTCGACTCATTGGCTGTCAACTCAGTTGCTTTAGTAGCGGGA GTGAGCACTCAGCTGATCATGACGACTCACCTTGCCTGTCTGACCTCGTTCACGGCTTTCTTGAAGAGGAAGACTCCGGTTTTGCTCACGCGTCAACTAA TGGTCACGGATCAGATTCAGAACGTGTCGACTTAGTCGCCGACTGTACTGACTTCGTCGTAGACATGATCAGATCAAGCAGTAACGATAATTTATTGTTC GCTCATGTTTCGAAAGCGATGGAGGAGTTTTCGTGTTTGAGAAATCATCAAAGACCTGTTTTGCGGCGCAAAGTGATGTTGTTTTTGAGAGAATTAGGTC ACAATGCAGCGATCTGCAAGACTAAATGGGAGTCCTCTGGTGGCGGCTTGACCGCCGGCAGCTACGAGTTTATCGACGTGGTGGTGCAATCGAAATCCTC CGCATTGCAGAACCGTTACGTAGTGGATCTCGATTTCGCTTCTCAATTCGAGATCGCGAGGCCTACAAGCCAGTACTTGAAGCTTCTGCACCATCTTCCT CGTGTTTTCGTAGGCAAAAGTGAGGATTTGAAGACGATCGTGAGGAGCATAAGTGACGCCGCTAAGAGATCTTTGAAGAGCAGAGAACTCTCCTTGCCTC CTTGGAGAAAAAACCGTTACATGCAAAACAAGTGGTTCGGTCCGTACCTCCGGACTGTCAATCCCCTACCTACGAACTCCTTCACACCGCCACCGTCAGT CAACGTTGTGAAATGCAGGCGCGTAGGCTTCGAAGACGCCGTCAACGGCCGTTTGTTTGTTCGTACGTGA
AA sequence Show only first row Show all	>Potri.004G184700.1 pacid=42796596 polypeptide=Potri.004G184700.1.p locus=Potri.004G184700 ID=Potri.004G184700.1.v4.1 annot-version=v4.1 MSGFARAKRVTDPLDDKAKARLIGCQLSCFSSGSEHSADHDDSPCLSDLVHGFLEEEDSGFAHASTNGHGSDSERVDLVADCTDFVVDMIRSSSNDNLLF AHVSKAMEEFSCLRNHQRPVLRRKVMLFLRELGHNAAICKTKWESSGGGLTAGSYEFIDVVVQSKSSALQNRYVVDLDFASQFEIARPTSQYLKLLHHLP RVFVGKSEDLKTIVRSISDAAKRSLKSRELSLPPWRKNRYMQNKWFGPYLRTVNPLPTNSFTPPPSVNVVKCRRVGFEDAVNGRLFVRT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07350			Protein of unknown function (D...		Potri.004G184700 [exp]	0	1
AT5G57655			xylose isomerase family protei...		Potri.018G096049 [exp]	2.82	0.8207
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Potri.017G040800 [exp]	2.82	0.8579	Pt-BMY1.1
					Potri.016G129400 [exp]	4.69	0.7544
AT5G24890			unknown protein		Potri.018G008200 [exp]	12.00	0.7315
AT5G03860		MLS	malate synthase (.1.2)		Potri.015G092000 [exp]	15.58	0.7830
AT5G21940			unknown protein		Potri.018G048100 [exp]	17.23	0.7604
AT4G35090		CAT2	catalase 2 (.1.2)		Potri.005G251600 [exp]	17.49	0.7172	CAT3,Pt-CAT1.5
AT3G27027			Protein of unknown function (D...		Potri.001G328701 [exp]	19.62	0.7710
AT4G20350			oxidoreductases (.1.2)		Potri.013G161600 [exp]	24.16	0.7795
AT3G48530		KING1	SNF1-related protein kinase re...		Potri.012G097000 [exp]	25.49	0.7282

Compare expression of checked genes

Potri.004G184700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.