Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27610 1061 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 565 / 0 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 564 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 550 / 0 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 548 / 0 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 546 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 530 / 2e-177 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G33170 536 / 1e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 529 / 3e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 529 / 5e-175 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047800 [exp] 643 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 604 / 0 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 603 / 0 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 597 / 0 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 577 / 0 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 574 / 0 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 555 / 0 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 551 / 0 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 550 / 0 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004892 [exp] 1136 / 0 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 596 / 0 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 590 / 0 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 568 / 0 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004081 [exp] 541 / 1e-178 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 539 / 1e-178 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 540 / 2e-178 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 530 / 7e-178 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013578 [exp] 540 / 1e-176 AT1G16480 1036 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10035788 [exp] 528 / 8e-176 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.004G184800.5 pacid=42796202 polypeptide=Potri.004G184800.5.p locus=Potri.004G184800 ID=Potri.004G184800.5.v4.1 annot-version=v4.1 ATGACTTTCAAGACCCTTACAAAACCTCAGATAAAGCAGACCTCAAAAACTCTCAGATCCCGCTTCAATCTGCAACTCCACACTCACCAGCCTCTGCTAC AAACCCATAGTGTTGCCTTGAAACCCCATTCAGGCTCTAAACCTCCAAATTTGTCAGAAGCACACCCCGTGTTCTGTAAAAGTCCGCAACAAGACCTTGT GTACTACAATCACTTGCTTTTTCAATGCTCTCGAGAGAACAGAAACAGAGGGGTTGTCGATCTCTTTGTGGGAATTCATCGTTCGGGTTTTTTTATTGAT GGGTCAACTCTTTCTTGTGTTTTAAAAGCTTGTTCGTTCTTGTTTGATCGAAACTTTGGTATTCAAGTGCATAATTATAGTTTAAAGTCTGGTTTTTTGG AGGATGTTAGTGTTGGTACTGCACTTTTGGATATGTATTTGAAGAATGAGAATGTTGAAGAAGGGAGGAGAGCTTTTGATGAAATGGGGGCGAGGAATGT AGTTTCGTGGACCTCATTGCTCACAGGATATGCACAAAATGGATTGAATGTGGAGACATTGAAATTGTTTCTTCGAATGCTAGTGGAGGGGATTAAGCCA AACCCATTTACGTTTTCGGCTGTTATTGGCGCTTTGACAGATGAAGGGATGGTTGAGGCGGGAATTCAAGTTCATACAATGGCGATAAAGAATGGATTCG GGGTTGCTACGTTTGCTAGCAATTCTTTGATTAATATGTACTTTAAGTCAGGGATGATTAGAGATGCTAGAGCTGTTTTTGATAGTATGACAGATAGGAA TGCTGTTAGTTGGAACAGCATGGTTGCTGGTCTGGTAACAAATGGGCTCCATTTAGAAACTTTGGATGTGTTTTACCATATGAGACTTGCGGGTGTAAAG CTCACCAAGATGGTTTTTGCCCCTGTTATTAAGCTGTGTGGTAATATTAAGGAATTGGGTTTTTCCAGGCAGCTTCATTGTCAGGTTTTAAAGAGTGGGT TTGAATATGATAAGAATATTAGGACTACACTGATGCTTGCTTACAGCAAGTGTGGGGAAATGGATAATGCTTTCAAGATATTTTCTGTGATGAGTGATGA AGTTCGAAATGTGGTGTCATGGACAGCCATGATTAGTGGGTATTTGCAGAATGGCATGGCAGAACAAGCTGTCAACCTGTTTTGCCAAATGAGTAGGGAA GGTATTAAACCAAATGATTTTACCTACTCTACTATACTTACGGCTCAACCTGGTGTTTCTCCTTTTGAGATGCACGCACAAGCCATCAAAAGAAATTACG TCAAGTCACCTTCTGTTGGAACTGCACTTTTAGATGCTTATGTCAAACGAGGGAATGTTGATGAAGCTTCAAAGGTTTTCCAAAGAATAGAGGAGAAGGA CATCGTGGCATGGTCGGCAATGATTTGTGGATATGCTCAAATAGGAGACACTGAGGGTGCTGTTAGGATATTTGTACAAATGGCAAAGGAGAAGATTAAA CCGAATGAGTATACCTTCTCTGGTATCATTAACGCATGTGCAGCTCCTACTGCAGGAGTAGAACAAGGGAAACAGCTCCATGCCTGGTCAATTAAATCAA GATTCAATAATGCTCTGTGTGTTAGTAGTGCTCTTCTTACCATGTATTCAAAGAGAGGGGACATTGAAAGTGCATTTGAAGTTTTCAAGAGGCAAAGGGA GAGGGATTTAGTGTCATGGAATTCTATTATCTCTGGATATGCACAACATGGCTATGGAAGGAAAGCTCTTGAAGTATTTGAGGAGATGCAGAGGCAAAAC TTGGAGATGGATGGTGTAACATTCATCGGAGTCATTTCTGCCTGCACGCATACTGGACTCGCAAATGAAGGTCAAAGATATTTCGATATAATGGTTAAAG ATCACCATATTGAGCCTAGAATGGAGCACTATTCTTGCATGGTTGATCTATATGGCCGGGCTGGAATGCTTGTAAAAGCCATGGAAATCATAAATGAGAT GCCATTTCCAGCAAGTGCAAATGTGTGGCGAACTCTCTTGGCTGCTTCCTGTATTCACCGTAATCTAGAGGTGGGGAAACTTGCAGCAGACAAGCTCATT TCTCTGCAGCCACAAAATCCAGCTTCATATGTCCTGCTAACAAATATGTATGCTTCGGTAGGAAACTGGAAAGAAAGAGCCAAAGTAAGGAAATTGATGG AGGAGAAGAAAGTGAAAAAAGTAGCAGGGTACAGCTGGATTGAGGTGAAGAACAAGACCTACACATTTTTGGCTGGTGATGTTTCTCACCCGCTTTCTAA TCAAATTTATGCAAAACTTGAAGAGCTGAGTTGCCAGTTGAAGGGTGCTGGTTATCAGCCTGATACTAGCTATGTGTTTCAGGATGTTGATGAGGAACAC AAGGAGGCTATTCTCTCTCAACATAGTGAGAGGCTTGCCATTGCTTTTGGATTAATTGGCACTCCTCCTGGGACTCCTCTCCAAATTGTTAAGAACCTGA GAGTCTGTGGAGATTGCCACTCTGTTATTAAGTTAATATCAATTCTAGAAGGCCGGGACATTGTTGTCAGGGATTCAAATCGATTCCATCACTTTAAGGG GGGTTTATGCTCTTGTGGTGATTATTGGTGA
AA sequence Show only first row Show all	>Potri.004G184800.5 pacid=42796202 polypeptide=Potri.004G184800.5.p locus=Potri.004G184800 ID=Potri.004G184800.5.v4.1 annot-version=v4.1 MTFKTLTKPQIKQTSKTLRSRFNLQLHTHQPLLQTHSVALKPHSGSKPPNLSEAHPVFCKSPQQDLVYYNHLLFQCSRENRNRGVVDLFVGIHRSGFFID GSTLSCVLKACSFLFDRNFGIQVHNYSLKSGFLEDVSVGTALLDMYLKNENVEEGRRAFDEMGARNVVSWTSLLTGYAQNGLNVETLKLFLRMLVEGIKP NPFTFSAVIGALTDEGMVEAGIQVHTMAIKNGFGVATFASNSLINMYFKSGMIRDARAVFDSMTDRNAVSWNSMVAGLVTNGLHLETLDVFYHMRLAGVK LTKMVFAPVIKLCGNIKELGFSRQLHCQVLKSGFEYDKNIRTTLMLAYSKCGEMDNAFKIFSVMSDEVRNVVSWTAMISGYLQNGMAEQAVNLFCQMSRE GIKPNDFTYSTILTAQPGVSPFEMHAQAIKRNYVKSPSVGTALLDAYVKRGNVDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIK PNEYTFSGIINACAAPTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQN LEMDGVTFIGVISACTHTGLANEGQRYFDIMVKDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEMPFPASANVWRTLLAASCIHRNLEVGKLAADKLI SLQPQNPASYVLLTNMYASVGNWKERAKVRKLMEEKKVKKVAGYSWIEVKNKTYTFLAGDVSHPLSNQIYAKLEELSCQLKGAGYQPDTSYVFQDVDEEH KEAILSQHSERLAIAFGLIGTPPGTPLQIVKNLRVCGDCHSVIKLISILEGRDIVVRDSNRFHHFKGGLCSCGDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27610			Tetratricopeptide repeat (TPR)...		Potri.004G184800 [exp]	0	1
AT3G62330			Zinc knuckle (CCHC-type) famil...		Potri.002G192800 [exp]	2.64	0.8206
AT5G57990		UBP23	ubiquitin-specific protease 23...		Potri.018G107500 [exp]	6.63	0.8066
AT3G50880			DNA glycosylase superfamily pr...		Potri.007G024200 [exp]	7.74	0.7770
AT5G64420			DNA polymerase V family (.1)		Potri.009G079900 [exp]	10.00	0.7958
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Potri.002G024100 [exp]	10.67	0.8036	XRN2.1
AT3G14470			NB-ARC domain-containing disea...		Potri.018G135800 [exp]	20.63	0.8191
AT3G04710		TPR10	tetratricopeptide repeat 10, a...		Potri.013G042300 [exp]	21.07	0.7737
AT5G06810			Mitochondrial transcription te...		Potri.016G048200 [exp]	23.74	0.7922
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Potri.002G258766 [exp]	24.06	0.8137
AT1G79030			Chaperone DnaJ-domain superfam...		Potri.001G438300 [exp]	34.46	0.7752

Compare expression of checked genes

Potri.004G184800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.