Plant FIBer expression Database

Potri.004G185050 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G24255 64 / 2e-12 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1), RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.2)
AT4G29090 47 / 2e-06 Ribonuclease H-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G175124
[exp]
167 / 5e-53 AT3G24255 70 / 8e-14 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1), RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.2)
Potri.002G067201
[exp]
119 / 3e-35 AT3G24255 68 / 5e-14 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1), RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.2)
Potri.018G042350
[exp]
42 / 5e-05 AT4G29090 81 / 3e-16 Ribonuclease H-like superfamily protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.004G185050.1 pacid=42795028 polypeptide=Potri.004G185050.1.p locus=Potri.004G185050 ID=Potri.004G185050.1.v4.1 annot-version=v4.1
ATGAATACTGTGTTTTCTGACTTTTGTAGTGCCTATGGTCTTAAAGTTAGCTATGATAAATCGCGATTTATGTTCTCCAAGAATGTTTCAAGAAGGAAAA
GGGCAATGTTTACTCAATTTTCTTCCATTAGAATCGCAAGTGGGCTTGGTAAGTACTTGGGGTTTCCATTTATACAGGGCCAGGTGAAAAGAGCTGATTT
CAATTTTATTTTTGATAAGATTAGCAGGAGGTTAGTGGACTGGAAGAATAGACTCTTGAACAAAGCAGGGAAGCTAACCCTCGCAAGATCCGTTATGTCT
ACTATTCCCATCTATCCTATGCAGAACTATTGGCTTCCTCAAGCAACTTGCATGGTTATTGATAGGGTTGTGCGTAACTTTATATGGGACAATAGGGAGT
CAGGTAATGGGTTACACCTGGTCAAGTGGGAGATTGTTACATGCCCTGGGTGTGAAGGAGGCTTGACTTCCTAA
AA sequence
>Potri.004G185050.1 pacid=42795028 polypeptide=Potri.004G185050.1.p locus=Potri.004G185050 ID=Potri.004G185050.1.v4.1 annot-version=v4.1
MNTVFSDFCSAYGLKVSYDKSRFMFSKNVSRRKRAMFTQFSSIRIASGLGKYLGFPFIQGQVKRADFNFIFDKISRRLVDWKNRLLNKAGKLTLARSVMS
TIPIYPMQNYWLPQATCMVIDRVVRNFIWDNRESGNGLHLVKWEIVTCPGCEGGLTS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G24255 RNA-directed DNA polymerase (r... Potri.004G185050
[exp]
0 1
Potri.015G098650
[exp]
2.44 0.9295
Potri.002G003050
[exp]
2.64 0.9063
AT5G48060 C2 calcium/lipid-binding plant... Potri.001G271400
[exp]
2.82 0.9056
AT1G09030 CCAAT NF-YB4 "nuclear factor Y, subunit B4"... Potri.013G019600
[exp]
6.70 0.9156
AT5G47580 ASG7 ALTERED SEED GERMINATION 7, un... Potri.001G123100
[exp]
9.16 0.8087
AT1G17020 ATSRG1, SRG1 senescence-related gene 1 (.1) Potri.001G382400
[exp]
10.24 0.9087 Pt-SRG1.2
AT1G09030 CCAAT NF-YB4 "nuclear factor Y, subunit B4"... Potri.005G027400
[exp]
12.48 0.8870
AT5G10530 Concanavalin A-like lectin pro... Potri.007G004500
[exp]
12.96 0.8597
AT2G29060 GRAS GRAS family transcription fact... Potri.001G242100
[exp]
13.56 0.8545
AT1G78380 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. ... Potri.001G431700
[exp]
13.85 0.9081

Potri.004G185050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.