Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16650 573 / 0 PRORP2 proteinaceous RNase P 2 (.1) AT4G21900 563 / 0 PRORP3 proteinaceous RNase P 3 (.1) AT2G32230 400 / 1e-133 PRORP1 proteinaceous RNase P 1 (.1) AT5G60430 125 / 2e-33 drug transmembrane transporters;antiporters (.1.2) AT1G77360 44 / 0.0003 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G145200 [exp] 964 / 0 AT2G16650 568 / 0.0 proteinaceous RNase P 2 (.1) Potri.017G144900 [exp] 413 / 2e-138 AT2G32230 671 / 0.0 proteinaceous RNase P 1 (.1) Potri.004G074100 [exp] 408 / 3e-136 AT2G32230 662 / 0.0 proteinaceous RNase P 1 (.1) Potri.006G160300 [exp] 349 / 3e-110 AT2G32230 404 / 1e-130 proteinaceous RNase P 1 (.1) Potri.006G124900 [exp] 48 / 2e-05 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G217600 [exp] 47 / 4e-05 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019535 [exp] 671 / 0 AT4G21900 607 / 0.0 proteinaceous RNase P 3 (.1) Lus10039049 [exp] 405 / 2e-135 AT2G32230 627 / 0.0 proteinaceous RNase P 1 (.1) Lus10043379 [exp] 390 / 8e-133 AT4G21900 369 / 7e-125 proteinaceous RNase P 3 (.1) Lus10038809 [exp] 398 / 2e-132 AT2G32230 615 / 0.0 proteinaceous RNase P 1 (.1) Lus10038817 [exp] 374 / 3e-124 AT2G32230 555 / 0.0 proteinaceous RNase P 1 (.1) Lus10043223 [exp] 348 / 4e-110 AT2G32230 433 / 2e-142 proteinaceous RNase P 1 (.1) Lus10014928 [exp] 310 / 2e-99 AT2G32230 503 / 1e-174 proteinaceous RNase P 1 (.1) Lus10010410 [exp] 45 / 0.0002 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010407 [exp] 44 / 0.0003 AT5G59900 981 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [poplar] [flax] PIN PF11977 [poplar] [flax] RNase_Zc3h12a Zc3h12a-like Ribonuclease NYN domain
Representative CDS sequence Show only first row Show all	>Potri.004G185200.2 pacid=42794008 polypeptide=Potri.004G185200.2.p locus=Potri.004G185200 ID=Potri.004G185200.2.v4.1 annot-version=v4.1 ATGGCAATGGCTTCCCCAGCCAACAAAAAGAAACCCAAAAGCAACCAAACCCCAGAATCCCAATTCAGCTACAACTTCAACTTCTATTCAAAATCCAAAG ACTTACACTCTGCTATATCCCTCTATGACACTGCAATATCCCAAAACACTCGTCTCAATCAGCACAACTTCAACACTCTCCTTTACCTCTGTTCAATCTC ACTCAATGACCCATCAACGAAAGACTTGTCCTTGCAATATGGGTTTCGAGTTTTTGATCATATGGTGTCTAATGGGATCAAACCCAATGAGGCCTCGATC ACAGCTGTTGCAAGACTAGCTGCTGCTAAAGGGGATGGTGATTATGCTTTTGATTTGGTTAAAAATATTGGGGTTTATAATGAATTGCCAAGGTTGAGGA CTTATGATCCTGCATTGTTTTGTTATTGTGAGAACTTGGAGGGCGATAAGGCTTACGAAGTGGAGGAGCATATGGGGAGAATGGGGGTGGGTTTAGAAGA GGGGGAGATTGCGGCATTGTTGAAAGTTAGTGTGGAGACTAGAAGAGAGGAGAGGGTTTATGAGTATTTGCAGAAATTGAGGAAGATGGTGAGGTGCGTG AGAGAAGAGACTGCAAAGGTTATTGAACATTGGTTTGAGGTTTTTGAGGGTAATGGGGTGGAATTGGATGTGGGACTAGTGAGGGAGGCGGTTTCAAGAA ATGGGGGAGGGTGGCATGGGCTTGGATGGATTGGGAAGGAGAAGTGGGTGGTGAGGAGAGGAAGTGTGGATGCTGGTGGAAAATGTTGTTGTTGTGGGGG GCAGTTGGTTTCTGTTGATATTGATGATGATGAAACGGAGAGGTTTGCCGAGTCTGTTGCTGGATTGGCTATGGAAAGGGAGGTTAAGGCTAATTTTAGC GAGTTTCAGAATTGGCTAGAAAAACATGCCAACTATGAAGCAATAATGGATGGAGCAAATATTGGACTTTATCAGCAGAATTTTGCAGAAGGCGGATTTA GCATTTCTCAGCTTGATGCTGTTATAAAAGACCTGTACAATCAGAGTGGGAAAAAACGGCCACTTGTTATTTTGCACAATAAGCGTCTCCGAGCACTGCT GCAGAATCCTTCCACTAGAGAGCTGATTCAAGAGTGGATAGAAAAAGATGTTCTTTACACCACGCCTCATGGTTCCAATGATGATTGGTATTGGCTATAT GCTGCTGTCAAACTTAGATGCTGGCTAGTAACAAATGATGAAATGCGAGATCACATTTTCGAACTACTAGGAAGCGACTTCTTTGTCAAGTGGAAAGAAC GACATCAAGTTCGATATACTTTTGTCAAAGGGAACTTGGAACTTCAAATGCCGCCTCTGTTTTCGATAGTTATCCAGGAATCAGAAAATGGGTCGTGGCA TGTCCCTGTAGCAGGTGATGGCAATGATTCTCCGCAAAGCTGGCTGTGCGTTTCTAGGCCAAGATCTTGTGATGCTCTTAAAGAAGCTTCGTGCATGGAA GAGTCGAAAGACAGTAATGATAGTCGCTGCAATAGTAAATTACCGACCTTTGGCAGACCAGAAAGTCTTGCAAGTTGCAAACATAAACTCCATAGCCGAG ATTCTTTTCAAGAATCTGATGATAAAATCACAGCTCTGACTGGAAAAAGGAAAGAGAGGTCACCATCTCCTTCCTAG
AA sequence Show only first row Show all	>Potri.004G185200.2 pacid=42794008 polypeptide=Potri.004G185200.2.p locus=Potri.004G185200 ID=Potri.004G185200.2.v4.1 annot-version=v4.1 MAMASPANKKKPKSNQTPESQFSYNFNFYSKSKDLHSAISLYDTAISQNTRLNQHNFNTLLYLCSISLNDPSTKDLSLQYGFRVFDHMVSNGIKPNEASI TAVARLAAAKGDGDYAFDLVKNIGVYNELPRLRTYDPALFCYCENLEGDKAYEVEEHMGRMGVGLEEGEIAALLKVSVETRREERVYEYLQKLRKMVRCV REETAKVIEHWFEVFEGNGVELDVGLVREAVSRNGGGWHGLGWIGKEKWVVRRGSVDAGGKCCCCGGQLVSVDIDDDETERFAESVAGLAMEREVKANFS EFQNWLEKHANYEAIMDGANIGLYQQNFAEGGFSISQLDAVIKDLYNQSGKKRPLVILHNKRLRALLQNPSTRELIQEWIEKDVLYTTPHGSNDDWYWLY AAVKLRCWLVTNDEMRDHIFELLGSDFFVKWKERHQVRYTFVKGNLELQMPPLFSIVIQESENGSWHVPVAGDGNDSPQSWLCVSRPRSCDALKEASCME ESKDSNDSRCNSKLPTFGRPESLASCKHKLHSRDSFQESDDKITALTGKRKERSPSPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16650		PRORP2	proteinaceous RNase P 2 (.1)		Potri.004G185200 [exp]	0	1
AT5G09380			RNA polymerase III RPC4 (.1)		Potri.006G143500 [exp]	1.41	0.8991
AT2G16650		PRORP2	proteinaceous RNase P 2 (.1)		Potri.009G145200 [exp]	2.23	0.8389
AT4G18905			Transducin/WD40 repeat-like su...		Potri.007G019833 [exp]	4.58	0.8146
AT5G67610			Uncharacterized conserved prot...		Potri.007G005500 [exp]	10.24	0.8025
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134100 [exp]	10.95	0.8211
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Potri.007G004100 [exp]	11.66	0.8025	Pt-VALRS.2
AT3G12340			FKBP-like peptidyl-prolyl cis-...		Potri.007G000500 [exp]	14.28	0.8161
AT5G07380			unknown protein		Potri.015G109700 [exp]	17.32	0.7503
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Potri.009G099300 [exp]	18.08	0.7668
AT5G53540			P-loop containing nucleoside t...		Potri.012G027901 [exp]	20.39	0.8457

Compare expression of checked genes

Potri.004G185200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.