Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CYP94C6,CYP94.5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27690 604 / 0 CYP94C1 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) AT3G48520 388 / 2e-130 CYP94B3 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) AT5G63450 383 / 1e-128 CYP94B1 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) AT3G56630 375 / 1e-125 CYP94D2 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) AT1G34540 374 / 4e-125 CYP94D1 "cytochrome P450, family 94, subfamily D, polypeptide 1", cytochrome P450, family 94, subfamily D, polypeptide 1 (.1) AT3G01900 355 / 8e-118 CYP94B2 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) AT5G23190 342 / 4e-112 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT1G63710 336 / 6e-110 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) AT5G08250 331 / 1e-108 Cytochrome P450 superfamily protein (.1) AT1G13140 328 / 8e-107 CYP86C3 "cytochrome P450, family 86, subfamily C, polypeptide 3", cytochrome P450, family 86, subfamily C, polypeptide 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G145400 [exp] 839 / 0 AT2G27690 622 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.013G075600 [exp] 654 / 0 AT2G27690 585 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.010G236700 [exp] 640 / 0 AT2G27690 576 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.002G042100 [exp] 417 / 1e-141 AT3G48520 451 / 1e-154 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.002G042200 [exp] 412 / 8e-140 AT5G63450 442 / 3e-151 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Potri.005G220900 [exp] 412 / 1e-139 AT3G48520 414 / 2e-140 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.005G220700 [exp] 410 / 4e-139 AT3G48520 436 / 4e-149 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.016G031700 [exp] 409 / 9e-139 AT3G56630 629 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.012G096800 [exp] 396 / 1e-133 AT3G48520 611 / 0.0 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014741 [exp] 409 / 8e-139 AT5G63450 461 / 1e-158 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10014742 [exp] 407 / 5e-138 AT5G63450 451 / 8e-155 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10033853 [exp] 399 / 1e-134 AT5G63450 474 / 7e-164 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10041562 [exp] 377 / 6e-126 AT3G01900 597 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Lus10033852 [exp] 367 / 4e-122 AT5G63450 457 / 4e-157 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10012531 [exp] 366 / 1e-121 AT3G01900 592 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Lus10017394 [exp] 344 / 1e-112 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10010193 [exp] 342 / 8e-112 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10043378 [exp] 332 / 1e-111 AT2G27690 341 / 1e-115 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Lus10036024 [exp] 327 / 3e-106 AT3G56630 380 / 3e-127 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.004G185300.1 pacid=42796232 polypeptide=Potri.004G185300.1.p locus=Potri.004G185300 ID=Potri.004G185300.1.v4.1 annot-version=v4.1 ATGGATTTTGTAGCTGCTTTTAGTTTTCTTTTCTTTGGTTTTACCATATTGTTCTCTATGTTTTCTTTCTTGATCTATGTTTGGAGGTTGAAACCATGGT GTAACTGTGATGTTTGCAAGGCCTATCTTTCTGCAAGCTGGACCAAAGACTTTACTAATCTTTGTGATTGGTATACTCACCTTCTTCGCAATTCAAAAAC TGGTACTATTCATTTGCATGTTCTCGGCAACATCATCACTGCTAATCCTGAGAATGTTGAGCACATGGTCAAGACAAAGTTTGATAACTACCCGAAAGGG AAACCTTTCTCTGATCTCTTGGGGGATCTTTTGGGCAGAGGTATTTTTAATGTTGATGGTGATTCCTGGAAGTTTCAGAGGAAAATGGCAAGCCTTGAAT TAGGGAGTGTTTCGATAAGAATGTATGCTTTTGATCTCATAATCACTGAGATTCGTAAGAGGCTGCTTCCGCTCTTGTCATCAGCTGCTGCTAAACAAGA AGTTTTGGATTTGCAAGATGTGTTTAGAAGATTTTCTTTCGATAACATTTGCAAATTCTCATTTGGGTTAGACCCCGGATGCCTCGAGTTATCTTTGCCT GTTTGTGAATTTGCTTTAGCTTTTGATGCCGCATCAAAGTTATCTGCCGAGCGAGCCATAGCGGCATCACCAATGGTCTGGAAGATCAAGAGGCTACTGA ACATAGGCTCAGAGAGGGAACTCAAAGAAGCAATCAAGAAGGTGGATGAGTTAGCTGAGAGAATGATAAATCAAAAGCGAAAAGAAGGTTTCTCTAATAT CAGTGATTTGCTATCAAGATTCATGACATCCATCAGTGATGACAGGTACCTTCGAGACATTGTTATAAGCTTTCTCTTGGCCGGTCGCGACACAGTTGCT TCAGGCCTAACCAGTTTCTTCTGGATATTATCACAACATCCAGAAGTAGTGTCAGCAATTCGAGAGGAGATAGAAAAAGTCACGGGGCCGAATCAAGAAC TTCCTAACTTTCAAGAAATGCTTCAAATGCATTACCTAAATGCTGCAATTTATGAAAGTTTGAGATTGTACCCACCAGTACAATTTGATTCTAAGTTTGC TCAAGAGGATGATATACTTCCTGATGGTACATTTATGCCTAAAGGGACCAGGGCAACATACCATCAATATGCAATGGGTCGAATGGAGCAGATTTGGGGA CCAGATTGTCTCGCTTTCAAACCTGAAAGATGGTTAAAGAAAGGAGTTTTTGAGCCCGCAAACCCTTTTAAGTATACTGTTTTTCATGCTGGGCATAGAA TTTGTATAGGCAAGGAACTTGCCCTTGTGGAGATGAAAACTGTTGCTCTTGCAATAATCCGAGGGTTTAATACTGTGGTTGAGGATCCGAATCAAGTACC AAGGTTCATCCCGGGTTTTACAGCCACCGTTCGAGGTGGCTTACCGGTTTTGATTCAAGAAAGGGAAGCCTGA
AA sequence Show only first row Show all	>Potri.004G185300.1 pacid=42796232 polypeptide=Potri.004G185300.1.p locus=Potri.004G185300 ID=Potri.004G185300.1.v4.1 annot-version=v4.1 MDFVAAFSFLFFGFTILFSMFSFLIYVWRLKPWCNCDVCKAYLSASWTKDFTNLCDWYTHLLRNSKTGTIHLHVLGNIITANPENVEHMVKTKFDNYPKG KPFSDLLGDLLGRGIFNVDGDSWKFQRKMASLELGSVSIRMYAFDLIITEIRKRLLPLLSSAAAKQEVLDLQDVFRRFSFDNICKFSFGLDPGCLELSLP VCEFALAFDAASKLSAERAIAASPMVWKIKRLLNIGSERELKEAIKKVDELAERMINQKRKEGFSNISDLLSRFMTSISDDRYLRDIVISFLLAGRDTVA SGLTSFFWILSQHPEVVSAIREEIEKVTGPNQELPNFQEMLQMHYLNAAIYESLRLYPPVQFDSKFAQEDDILPDGTFMPKGTRATYHQYAMGRMEQIWG PDCLAFKPERWLKKGVFEPANPFKYTVFHAGHRICIGKELALVEMKTVALAIIRGFNTVVEDPNQVPRFIPGFTATVRGGLPVLIQEREA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Potri.004G185300 [exp]	0	1	CYP94C6,CYP94.5
AT2G39530			Uncharacterised protein family...		Potri.010G204700 [exp]	7.74	0.8833
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Potri.016G066700 [exp]	18.54	0.8557	Pt-CDPK5.5,CPK19
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Potri.019G128600 [exp]	19.79	0.8005
					Potri.001G203400 [exp]	22.84	0.8605
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Potri.013G012600 [exp]	29.91	0.8534
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Potri.009G010200 [exp]	33.13	0.8524
AT2G01670		ATNUDT17	nudix hydrolase homolog 17 (.1...		Potri.008G134000 [exp]	33.76	0.8373
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Potri.002G155300 [exp]	34.29	0.8420	BAP2.1
					Potri.010G150750 [exp]	34.78	0.8374
					Potri.001G202800 [exp]	35.09	0.8416

Compare expression of checked genes

Potri.004G185300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.