Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44610 548 / 0 Protein kinase superfamily protein (.1) AT5G47750 382 / 7e-128 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT4G26610 375 / 3e-126 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT3G12690 368 / 2e-122 AGC1.5 AGC kinase 1.5 (.1.2.3) AT5G55910 364 / 5e-122 D6PK D6 protein kinase (.1) AT3G27580 364 / 6e-121 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT1G16440 361 / 7e-121 RSH3 root hair specific 3 (.1) AT1G79250 362 / 2e-120 AGC1.7 AGC kinase 1.7 (.1.2) AT5G40030 356 / 5e-119 Protein kinase superfamily protein (.1) AT2G44830 361 / 1e-117 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G146500 [exp] 648 / 0 AT3G44610 548 / 0.0 Protein kinase superfamily protein (.1) Potri.010G236200 [exp] 505 / 4e-178 AT3G44610 497 / 2e-174 Protein kinase superfamily protein (.1) Potri.008G024000 [exp] 503 / 3e-177 AT3G44610 487 / 1e-170 Protein kinase superfamily protein (.1) Potri.006G003800 [exp] 384 / 3e-128 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.016G004900 [exp] 381 / 3e-127 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.001G344600 [exp] 379 / 2e-125 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.014G047500 [exp] 372 / 3e-122 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.009G146700 [exp] 372 / 5e-121 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.017G075400 [exp] 361 / 9e-121 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006272 [exp] 554 / 0 AT3G44610 591 / 0.0 Protein kinase superfamily protein (.1) Lus10020572 [exp] 553 / 0 AT3G44610 585 / 0.0 Protein kinase superfamily protein (.1) Lus10043435 [exp] 459 / 5e-160 AT3G44610 466 / 2e-162 Protein kinase superfamily protein (.1) Lus10016629 [exp] 380 / 5e-127 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10038753 [exp] 375 / 3e-125 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10039105 [exp] 375 / 4e-125 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10022272 [exp] 371 / 4e-123 AT3G27580 684 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10042911 [exp] 367 / 6e-123 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10006273 [exp] 368 / 9e-121 AT3G52890 604 / 0.0 KCBP-interacting protein kinase (.1.2) Lus10020571 [exp] 367 / 1e-120 AT2G36350 612 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.004G186200.1 pacid=42795309 polypeptide=Potri.004G186200.1.p locus=Potri.004G186200 ID=Potri.004G186200.1.v4.1 annot-version=v4.1 ATGGAGCCTCCTCCATGGCTGGACGATTTAGCCGACGACCTCCAAAGCATAAGTTTCACATCCACCACCACAACAACAACCACACTCCACCGGAGCACCA GCTCCGGCTCCTCCTCCGCCTCACTCACTCCTGCTCCCTCCACTCACACATCTTTCTCCTCTAAATCCACAAGCAAACACTCCCTCTCCCTCTCTGATCT CCGCTTCTCCCTCCGCCTGGGTTCCGGCGACATCGGTTCAGTTTACCTAGTCGAACTCAAAGCTAAACCTAATGAGAAGGAATCTCCGGTTTTTGCGGCG AAAATCATGGATAAGAAGGAGTTAGTTAGCAGAAGTAAAGAAGGAAGAGCGAGGACTGAGCGGGAAATACTTGAAACTCTGGATCATCCGTTTTTGCCTA CATTATACGCTTGTATTGAATCTCAACGATGGCTATGTTTGTTAACGGAGTTTTGTCCCGGCGGTGACCTTCATGTTCTCCGTCAACGCCAGCCTCTTAA ACGATTCGAAGAAACCGCCGTCAGGTTCTTTGCATCGGAGGTGATTGTGGCTTTAGAGTACCTTCATATGATGGGGATTGTTTACCGTGATCTCAAGCCT GAAAATGTTCTTGTTCGATCAGATGGTCATATAATGCTCACTGATTTTGACCTCTCGTTAAAATGTGATGATTCTACGTCAACGCCTCAGATCATCTCCG ACAAAAACCACGCTGCTGCAGCCCCGAAAAATGACTACCTGGTTGAGCATCCTCGTTATACTTCATCTTCATGCATTATTCCTAACTGTATAGTCCCTGC TGTTTCATGTTTCCACCCAAGACGTAAACGCAAGAAGAAGATGGGCAACCGAGGTGGGCCTGAGTTCGTAGCCGAGCCCGTTGATGTTCGGTCGATGTCA TTTGTTGGGACCCACGAGTATTTGGCGCCGGAGATTGTATCCGGCGAGGGCCATGGTAGTCCTGTGGATTGGTGGACACTAGGAATATTCATGTTCGAAC TATTTTATGGGGTTACGCCTTTTAGAGGTGTTGACCATGAGCTAACCCTAGCTAATATCGTGGCTCGAGCACTCGAGTTCCCTAAAGAACCAGTTGTGCC TGCCACAGCCAAGGACCTTATTTCGCAGCTACTGGTTAAAGATCCGGCAAGACGAATGGGTTCCACCATGGGTGCATCGGCAGCCAAGCACCACCCTTTT TTCCAGGGGGTTAATTGGGCATTGTTGCGATGTACACCTCCACCATATGTTCCTCCACCATTTAATACAGAAGTTGTATCAGATGAAAGTTGTCCTGAGA CCCCTGTAGAATATTATTAG
AA sequence Show only first row Show all	>Potri.004G186200.1 pacid=42795309 polypeptide=Potri.004G186200.1.p locus=Potri.004G186200 ID=Potri.004G186200.1.v4.1 annot-version=v4.1 MEPPPWLDDLADDLQSISFTSTTTTTTTLHRSTSSGSSSASLTPAPSTHTSFSSKSTSKHSLSLSDLRFSLRLGSGDIGSVYLVELKAKPNEKESPVFAA KIMDKKELVSRSKEGRARTEREILETLDHPFLPTLYACIESQRWLCLLTEFCPGGDLHVLRQRQPLKRFEETAVRFFASEVIVALEYLHMMGIVYRDLKP ENVLVRSDGHIMLTDFDLSLKCDDSTSTPQIISDKNHAAAAPKNDYLVEHPRYTSSSCIIPNCIVPAVSCFHPRRKRKKKMGNRGGPEFVAEPVDVRSMS FVGTHEYLAPEIVSGEGHGSPVDWWTLGIFMFELFYGVTPFRGVDHELTLANIVARALEFPKEPVVPATAKDLISQLLVKDPARRMGSTMGASAAKHHPF FQGVNWALLRCTPPPYVPPPFNTEVVSDESCPETPVEYY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44610			Protein kinase superfamily pro...		Potri.004G186200 [exp]	0	1
AT4G28950		ATRAC7, ARAC7, ...	Arabidopsis RAC-like 7, RHO-re...		Potri.018G083400 [exp]	2.00	0.8932	Pt-ARAC7.2
AT3G28040			Leucine-rich receptor-like pro...		Potri.002G233600 [exp]	6.32	0.8504
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Potri.005G181400 [exp]	6.48	0.8994
AT3G27060		ATTSO2, TSO2	TSO MEANING 'UGLY' IN CHINESE ...		Potri.017G063900 [exp]	13.03	0.8731
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Potri.004G131600 [exp]	15.87	0.8803
AT1G53140		DRP5A	Dynamin related protein 5A (.1...		Potri.011G118500 [exp]	16.61	0.8790
AT1G54385			ARM repeat superfamily protein...		Potri.013G058700 [exp]	18.13	0.8692
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Potri.019G040000 [exp]	18.33	0.8500
AT3G48210			unknown protein		Potri.015G080900 [exp]	20.17	0.8608
AT4G28230			unknown protein		Potri.019G116200 [exp]	20.85	0.8562

Compare expression of checked genes

Potri.004G186200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.