Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36350 623 / 0 Protein kinase superfamily protein (.1) AT3G52890 607 / 0 KIPK KCBP-interacting protein kinase (.1.2) AT5G03640 602 / 0 Protein kinase superfamily protein (.1) AT5G47750 565 / 0 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT4G26610 543 / 0 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G55910 530 / 0 D6PK D6 protein kinase (.1) AT5G40030 504 / 3e-171 Protein kinase superfamily protein (.1) AT2G44830 511 / 3e-170 Protein kinase superfamily protein (.1) AT3G27580 504 / 6e-170 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT3G12690 486 / 4e-163 AGC1.5 AGC kinase 1.5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G146700 [exp] 1394 / 0 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.006G114900 [exp] 674 / 0 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Potri.016G004900 [exp] 568 / 0 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.006G003800 [exp] 565 / 0 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.014G047500 [exp] 540 / 0 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.001G344600 [exp] 535 / 3e-180 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.002G137700 [exp] 530 / 5e-178 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.017G075400 [exp] 509 / 7e-173 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.008G080600 [exp] 483 / 3e-161 AT1G79250 684 / 0.0 AGC kinase 1.7 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020571 [exp] 686 / 0 AT2G36350 612 / 0.0 Protein kinase superfamily protein (.1) Lus10006273 [exp] 675 / 0 AT3G52890 604 / 0.0 KCBP-interacting protein kinase (.1.2) Lus10035591 [exp] 636 / 0 AT2G36350 746 / 0.0 Protein kinase superfamily protein (.1) Lus10008634 [exp] 629 / 0 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Lus10038753 [exp] 555 / 0 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10016629 [exp] 553 / 0 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10039105 [exp] 553 / 0 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10022272 [exp] 533 / 1e-180 AT3G27580 684 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10042911 [exp] 524 / 1e-178 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10032185 [exp] 501 / 5e-169 AT5G40030 669 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.004G186300.1 pacid=42795955 polypeptide=Potri.004G186300.1.p locus=Potri.004G186300 ID=Potri.004G186300.1.v4.1 annot-version=v4.1 ATGGATGCAGTGCCCAGCATTTCTGAAATTGTTGAATCAAATGAAGAGTTAGATTTTGAATCGAAAATGGATGAGAAAGCCAGGAAGCATTCTGTTCTGA AGTTTGGTAGTCGGTATTCTATTGAAGATGACATCAATCGTCTTTTTGAAGCAATTGAGATTAGAACTTCAGCTAAGCACCTGGATGCAGGTGTTAAAGA TGCTTTACGGAAGAAAGCTATGAAGAGACCAATGAAGGTTGGTTCACCTCAAATGTCAGGAATTGGAATTTCAGAGCCTGTTAGTTTGAAGCAGGCTTTG AGAGGATTGTGCATCTCTCAGGCATCGGAGATGGCAGCAATGAAGCGATTATCAAGACCAACAAGTTCATCAAGGTCCTCAGAAGTCGGAACTATCAAAA GGTTGTACAGGGCAGTGGTAGTTGAGGCTGATGGATCTGTGCTCCCCCTAAATGAAGGTAATGGAAATTTGGTGGAAATTTCTCTTGTACCAGAAAAAAT AACATCAAATTCTTCTGAGAAGATGTTTGAATCCTCACAAATGGTTAAGGCAGAGTTATCAGATCAAAATCCCCATTCTTCCCGGGATCAGATTGTTCCT CTACCTACAGGGTTTGATAGTCAAATATCAAAGGAAGAACTCAGAGAGCTTAAATCTACTGATTGTTCATCTACCAGTCATGTTGGTGAGAAGCTAAAGG AGGTGGATGAGATTGCTCCAGCCTCGATCAAAATTTCCGTCAAAACTCCAGTGCCAGAGGAGAAGAAAAACCAGTTGCATGCTGCTTCTTCACTTTCTGT GTCTGGTTCAAGCCCTGGACATACGGTGAATAATTCTGTATGTAACAGTCCATGCTTTATGAAGCCAATCTTCAGGAGCAAGAACTTCATTAAGAAAAAA GTAAAGCAGGATTCAGCTTCTGCCTCTAGCAGTTCCAATCCAAGTAGTAGAAAAGTCAATAGTGATCTGAATCCTAGTACAAGCAATTTGGACAACATGG TGCATGACTGTATTCTAGAGAGTGTAAAGAGAGAAGGTACAAAAGCTTCTCCAGCTTCTAGCAGTAGAAATAATAGCACTGAATACAATTCAATCATTGC TGACACAAGTTCAAGCAGGCTGGGTTCAAGTCTGAATGGTGCTAACAGAACAGGATCTATATTGGCAAAGGTAGATGAAAAATCAAGATCAAGAGAAAAG GGGGAATTCTCACAAAGTTCAAAAAGTAGCATCGGTGACTATAGTAGTAGCACAAGTATTAGTGATGATAGCAATCTCAGTGGTTCTAGTCATAGTGGCA GTCGGCCGCACATGTCAAAGGACTTGAGGTGGGAAGCCATTCGCCATACTCAGAAGCAGCATGGAAGCTTTTGTTTGAAACATTTTAAGCTGATCAAGAA GCTTGGTTGTGGGGATATTGGGTCTGTTTATCTTGCTGAGCTAACTGGTACAAATTGCCTATTTGCTTTGAAAGTAATGGATAATGACTACTTGGCAACT AGGAAGAAGATGTCTAGGGCCCTAACAGAAAGAAAGATTTTGCAGATGCTGGATCATCCTTTTCTCCCTACATTATATGCCCATTTTGTGTCAGATAAAC TCTCCTGCCTGGTTATGGAGTATTGTCCTGGCGGAGATCTGCATGTGCTGCGGCAGAAACAATCTGGCAGGAGTTTCTCTGAACCAGCTGCAAGGTTTTA TGTTGCTGAAGTCCTCGTTGCACTGGAGTACTTGCACATGCTTGGAGTTGTTTATCGAGATTTAAAACCAGAAAATATTCTGGTCCGAGAGGATGGGCAT ATCATGCTTTCAGATTTTGACCTGTCACTCAGGTGTGCTGTTAATCCTATTCTACTTAAATCATCTTCACCTGCTGAAGAGCCGACAAAAAAGATGTCGA GTCCATGCTCTGAAGCTAGCTGTATTGACCCATTCTGTCTCCACCCAGCCTGGCAAGTATCATGTTTCACTCCAAGACTTCTGTCAGTTGCTGCAAAATC TCAGAAGTTAAAATCTGACCTAGCTGCTCAGGTCAGCCCACTGCCACAGGTGGTAGTGGAGCCAACTAGTGCTCGTTCTAACTCCTTTGTCGGAACCCAT GAATACCTGGCCCCTGAGATCATCAAAGGTGAGGGGCATGGCAGTGCTGTTGATTGGTGGACGTTTGGAATCTTCCTCTTTGAGCTGTTATATGGTAGAA CGCCTTTCAAAGGGTCAGGAAATGAGGAAACATTATCCAATGTTGTGTCACGAAGCCTCAAGTTCCCCAGTAACCCTATAGTTAGTTTTCATGCACGTGA TTTGATTAGGGGGTTGTTGATAAAGGAACCTGGGGATCGGCTAGGATCTGCCAAAGGGGCTGCAGAGATTAAACAGCACCCCTTCTTCGACGGCCTTAAC TGGGCTCTGATACGGTGTGCAATTCCCCCAGAGCTACCTAATCAATGTGATGTTGGAATTGCATCGAACACATTTTCTCAGAACAAGGACTGCGCTAAGT TCAAGGATACAGCAGAGCTAAGAGAGTTTGAGATGTTTTAG
AA sequence Show only first row Show all	>Potri.004G186300.1 pacid=42795955 polypeptide=Potri.004G186300.1.p locus=Potri.004G186300 ID=Potri.004G186300.1.v4.1 annot-version=v4.1 MDAVPSISEIVESNEELDFESKMDEKARKHSVLKFGSRYSIEDDINRLFEAIEIRTSAKHLDAGVKDALRKKAMKRPMKVGSPQMSGIGISEPVSLKQAL RGLCISQASEMAAMKRLSRPTSSSRSSEVGTIKRLYRAVVVEADGSVLPLNEGNGNLVEISLVPEKITSNSSEKMFESSQMVKAELSDQNPHSSRDQIVP LPTGFDSQISKEELRELKSTDCSSTSHVGEKLKEVDEIAPASIKISVKTPVPEEKKNQLHAASSLSVSGSSPGHTVNNSVCNSPCFMKPIFRSKNFIKKK VKQDSASASSSSNPSSRKVNSDLNPSTSNLDNMVHDCILESVKREGTKASPASSSRNNSTEYNSIIADTSSSRLGSSLNGANRTGSILAKVDEKSRSREK GEFSQSSKSSIGDYSSSTSISDDSNLSGSSHSGSRPHMSKDLRWEAIRHTQKQHGSFCLKHFKLIKKLGCGDIGSVYLAELTGTNCLFALKVMDNDYLAT RKKMSRALTERKILQMLDHPFLPTLYAHFVSDKLSCLVMEYCPGGDLHVLRQKQSGRSFSEPAARFYVAEVLVALEYLHMLGVVYRDLKPENILVREDGH IMLSDFDLSLRCAVNPILLKSSSPAEEPTKKMSSPCSEASCIDPFCLHPAWQVSCFTPRLLSVAAKSQKLKSDLAAQVSPLPQVVVEPTSARSNSFVGTH EYLAPEIIKGEGHGSAVDWWTFGIFLFELLYGRTPFKGSGNEETLSNVVSRSLKFPSNPIVSFHARDLIRGLLIKEPGDRLGSAKGAAEIKQHPFFDGLN WALIRCAIPPELPNQCDVGIASNTFSQNKDCAKFKDTAELREFEMF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36350			Protein kinase superfamily pro...		Potri.004G186300 [exp]	0	1
AT5G55600			agenet domain-containing prote...		Potri.016G007500 [exp]	2.82	0.8525
AT3G18210			2-oxoglutarate (2OG) and Fe(II...		Potri.015G043100 [exp]	2.82	0.8027
AT1G71210			Pentatricopeptide repeat (PPR)...		Potri.004G229100 [exp]	4.89	0.8221
AT2G41620			Nucleoporin interacting compon...		Potri.012G034800 [exp]	7.74	0.7845
AT4G39870			TLD-domain containing nucleola...		Potri.005G075800 [exp]	12.44	0.7750
AT5G01260			Carbohydrate-binding-like fold...		Potri.006G099200 [exp]	13.03	0.8205
AT5G07900			Mitochondrial transcription te...		Potri.015G038400 [exp]	14.00	0.7848
AT5G55600			agenet domain-containing prote...		Potri.006G017400 [exp]	16.94	0.8122
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Potri.003G063700 [exp]	18.00	0.7956
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Potri.012G099600 [exp]	19.13	0.8154

Compare expression of checked genes

Potri.004G186300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.