Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44620 287 / 2e-98 protein tyrosine phosphatases;protein tyrosine phosphatases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G146800 [exp] 427 / 2e-153 AT3G44620 281 / 4e-96 protein tyrosine phosphatases;protein tyrosine phosphatases (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019533 [exp] 301 / 3e-102 AT3G44620 262 / 6e-87 protein tyrosine phosphatases;protein tyrosine phosphatases (.1.2) Lus10043376 [exp] 290 / 3e-100 AT3G44620 254 / 1e-86 protein tyrosine phosphatases;protein tyrosine phosphatases (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF01451 [poplar] [flax] LMWPc Low molecular weight phosphotyrosine protein phosphatase
Representative CDS sequence Show only first row Show all	>Potri.004G186400.1 pacid=42794256 polypeptide=Potri.004G186400.1.p locus=Potri.004G186400 ID=Potri.004G186400.1.v4.1 annot-version=v4.1 ATGGTTAGGACATCAGTAACAACCTTGTATAACAACAGTTCTCCTAATACTAGGTTTCCAAACCCATCTCTAAATTTACAATTTTGCCACAATGCCACTA AACTCCTCTCTCTGAAAGCCCCATTTCCTCTCATTAATAAATATCCATTTCTCCAATATTCCCATCTTCATCACAAAAACCCCACAAGCAGTGCTATCCA TTTCAGGTCCTTGGTGATCAAAGCATCATCATCAATGGCTTCTTCAACAGAGACCAAACCTTTCGCTGTTCTTTTTGTGTGTCTAGGCAACATTTGTAGG AGTCCAGCTGCTGAGGGCGTGTTTACTGATATTGTTAACAAGAGAGGACTTGATTCTAAGTTCAAGATTGACTCTGCTGGCACCATTAATTACCATGAGG GTAATCCAGCAGACTCAAGAATGAGGGCAGCTTCTAAAAGGCGTGGGATTGAGATAACTTCCATATCAAGGCCCATTCGACCGTCTGATTTTAGAGATTT TGATATCATTCTTGCTATGGACAACCAAAATAGAGAGCATATAATGGAAGCTTTTAATAAGTGGAAATTTAAAGAGACACTTCCTGATGATGCACACAAG AAGGTTAAGCTAATGTGTTCTTTTTGTAAGAAACATGATGAAACAGAAGTCCCAGATCCTTACTATGGCGGACCACAGGGTTTTGAGAAGGTCTTGGATC TACTTGAAGATGCTTGTGAATCATTGTTGGACAGCATTTTGGCTGAAAAAAATTAA
AA sequence Show only first row Show all	>Potri.004G186400.1 pacid=42794256 polypeptide=Potri.004G186400.1.p locus=Potri.004G186400 ID=Potri.004G186400.1.v4.1 annot-version=v4.1 MVRTSVTTLYNNSSPNTRFPNPSLNLQFCHNATKLLSLKAPFPLINKYPFLQYSHLHHKNPTSSAIHFRSLVIKASSSMASSTETKPFAVLFVCLGNICR SPAAEGVFTDIVNKRGLDSKFKIDSAGTINYHEGNPADSRMRAASKRRGIEITSISRPIRPSDFRDFDIILAMDNQNREHIMEAFNKWKFKETLPDDAHK KVKLMCSFCKKHDETEVPDPYYGGPQGFEKVLDLLEDACESLLDSILAEKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44620			protein tyrosine phosphatases;...		Potri.004G186400 [exp]	0	1
AT4G32915			unknown protein		Potri.018G058200 [exp]	14.07	0.8738
AT2G16780		MSI02, NFC2, NF...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.004G175300 [exp]	20.19	0.8672
AT5G06490			RING/U-box superfamily protein...		Potri.008G019000 [exp]	38.26	0.8711
					Potri.017G152460 [exp]	42.89	0.8580
AT5G65250			unknown protein		Potri.005G073500 [exp]	44.38	0.8751
AT1G09520			unknown protein		Potri.010G002200 [exp]	57.72	0.8470
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Potri.004G046300 [exp]	80.42	0.8283
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Potri.007G028300 [exp]	86.25	0.8477
AT2G31670			Stress responsive alpha-beta b...		Potri.001G413500 [exp]	91.21	0.8525
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Potri.009G104300 [exp]	101.44	0.8259

Compare expression of checked genes

Potri.004G186400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.