Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22510 913 / 0 INV-E, At-A/N-InvE Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) AT1G56560 751 / 0 A/N-InvA alkaline/neutral invertase A, Plant neutral invertase family protein (.1) AT3G05820 725 / 0 At-A/N-InvH Arabidopsis alkaline/neutral invertase H, alkaline/neutral invertase H, invertase H (.1) AT3G06500 724 / 0 A/N-InvC alkaline/neutral invertase C, Plant neutral invertase family protein (.1) AT1G35580 610 / 0 A/N-InvG, CINV1 alkaline/neutral invertase G, cytosolic invertase 1 (.1.2.3) AT4G09510 608 / 0 A/N-InvI, CINV2 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) AT4G34860 590 / 0 A/N-InvB alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) AT1G22650 588 / 0 A/N-InvD alkaline/neutral invertase D, Plant neutral invertase family protein (.1) AT1G72000 575 / 0 A/N-InvF alkaline/neutral invertase F, Plant neutral invertase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G024100 [exp] 937 / 0 AT5G22510 894 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.010G236100 [exp] 904 / 0 AT5G22510 897 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.008G101500 [exp] 757 / 0 AT3G06500 911 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Potri.005G010800 [exp] 738 / 0 AT1G56560 946 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Potri.013G006600 [exp] 734 / 0 AT1G56560 945 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Potri.004G167500 [exp] 600 / 0 AT4G34860 994 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.009G129000 [exp] 596 / 0 AT4G34860 972 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.013G110800 [exp] 592 / 0 AT4G09510 992 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.019G082000 [exp] 587 / 0 AT4G09510 981 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043375 [exp] 940 / 0 AT5G22510 918 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Lus10019532 [exp] 927 / 0 AT5G22510 922 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Lus10037817 [exp] 746 / 0 AT3G06500 927 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Lus10017095 [exp] 746 / 0 AT3G06500 933 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Lus10010900 [exp] 745 / 0 AT1G56560 937 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Lus10031431 [exp] 744 / 0 AT1G56560 936 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Lus10033144 [exp] 606 / 0 AT4G34860 944 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10034525 [exp] 604 / 0 AT4G34860 943 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10042390 [exp] 599 / 0 AT4G34860 982 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10026284 [exp] 596 / 0 AT4G34860 979 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF12899 [poplar] [flax] Glyco_hydro_100 Alkaline and neutral invertase
Representative CDS sequence Show only first row Show all	>Potri.004G186500.4 pacid=42795707 polypeptide=Potri.004G186500.4.p locus=Potri.004G186500 ID=Potri.004G186500.4.v4.1 annot-version=v4.1 ATGGCTACTTCAAAGACGGTTTTACAAGTCTTATCTGGTGGTTTACCTTGCCCGCATCGTTTTGATCTGTCTTTCGGCGGTTTGAATTCCGTGCTTTCGA TCTGCTCTGATGTAAAACGTAGGAAGAATATAGGTTTGGTATACAAAAAGTTGAACAATGGGATGAGGTTGTTAGGGAAATGCAGGAGTCGGGGTGTAGG TGCTGTGACGTCTCGTGGGAAGGTGAAATTTATTGACAGGTGGGAATCTATGAGGTGCAAATGCCAAAAGGCTGAAAGTTTTGGAGGGGCAACTGCAAAT GAATGGAGCCCAGTTTCGCTTCCTGTAAATGGCGTTTACGGTGCCACGAATATTTTTGAAAAGGGAAGTTTTGCATTGAAGGGTAATGAAGAGACGCAAT CGATTGAGGAAGAAGCATGGGATTTACTCCGTGCTTCGGTTGTTTGTTACTGTGGTAATCCAATTGGAACAATTGCTGCAAATGATCCAAACAGTACTAG CATTCTGAACTATGATCAGGTTTTTATTCGTGACTTCATTCCGTCTGGAATAGCTTTCCTTTTGAAGGGAGAGTATGATATTGTGAGGAATTTCATCCTG TACACCCTTCAACTACAGAGTTGGGAGAAAACCATGGATTGTTACAGCCCTGGTCAGGGACTTATGCCTGCCAGTTTTAAGGTGCGCACTGTTCCCCTTG ACAGTGAGGATTCTGCTACTGAAGAGGTATTAGATGCTGACTTTGGTGAAGCAGCTATTGGCCGAGTTGCTCCAGTTGATTCTGGATTGTGGTGGATTAT ACTGTTACGAGCTTATGGAAAATGCTCTGGGGATCTTTCAGTGCAAGAGAGAGTCGATGTGCAAACTGGGATGAAAATGATCTTAAGGCTGTGTCTTGCT GATGGTTTTGACATGTTTCCAACTTTATTGGTGACAGATGGTTCTTGCATGATAGATCGTCGCATGGGAATTCATGGACATCCCCTGGAGATTGAGGCAC TCTTTTATTCAGCATTACTTTGTGCACGTGAGATGCTTGCTCCAGAGGATGGATCAGCTGACCTCATTAGAGCTCTTAACAATCGTCTAGTTGCCCTTTC ATTCCACATCAGGGAATATTACTGGATAGATTTGAAAAAACTGAATGAAATATACCGTTATACCACAGAGGAATACTCTTATGATGCAGTTAATAAGTTT AATATCTATCCAGATCAGATTCCTCCCTGGCTGGTTGAATTCATGCCCAACAAAGGAGGTTATTTGATTGGAAATCTGCAACCAGCTCACATGGATTTCC GTTTCTTTACTCTTGGAAACTTATGGTCTATTGTAAGTAGTCTTGCAACATTGGATCAGTCCCATGCCATCCTGGATCTTATTGAAGCAAAATGGGCAGA ATTAGTGGCGGAAATGCCAATCAAAATATGCTATCCTGCTCTTGAAGGCCAGGAATGGAGGATCGTCACTGGCAGCGATCCCAAGAACACAGCCTGGTCT TATCACAATGGAGGATCTTGGCCAACTTTGCTTTGGCAGCTTACTGTAGCATGCATAAAGATGAATAGACCAGAGATTGCTGAAAGAGCAGTTCAGCTTG TTGAGAGGCGCATATCCAGAGACAAGTGGCCAGAATACTATGACACTAAGCGAGCAAGATTTATTGGAAAACAGGCACACTTATTTCAAACCTGGTCGAT TTCAGGTTACCTCGTGGCAAAACTCTTCCTTGCCAACCCTAGTGCAGCAAAGATTTTCGTAAATGAAGAGGATCCAGAGCTTGTAAATGCCTTGATTAGT GCCAACCCAAGGAGGAAACGTGCTAGGAAAATCTTCAAGCAGCCCTTCATTGTATGA
AA sequence Show only first row Show all	>Potri.004G186500.4 pacid=42795707 polypeptide=Potri.004G186500.4.p locus=Potri.004G186500 ID=Potri.004G186500.4.v4.1 annot-version=v4.1 MATSKTVLQVLSGGLPCPHRFDLSFGGLNSVLSICSDVKRRKNIGLVYKKLNNGMRLLGKCRSRGVGAVTSRGKVKFIDRWESMRCKCQKAESFGGATAN EWSPVSLPVNGVYGATNIFEKGSFALKGNEETQSIEEEAWDLLRASVVCYCGNPIGTIAANDPNSTSILNYDQVFIRDFIPSGIAFLLKGEYDIVRNFIL YTLQLQSWEKTMDCYSPGQGLMPASFKVRTVPLDSEDSATEEVLDADFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLSVQERVDVQTGMKMILRLCLA DGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIEALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWIDLKKLNEIYRYTTEEYSYDAVNKF NIYPDQIPPWLVEFMPNKGGYLIGNLQPAHMDFRFFTLGNLWSIVSSLATLDQSHAILDLIEAKWAELVAEMPIKICYPALEGQEWRIVTGSDPKNTAWS YHNGGSWPTLLWQLTVACIKMNRPEIAERAVQLVERRISRDKWPEYYDTKRARFIGKQAHLFQTWSISGYLVAKLFLANPSAAKIFVNEEDPELVNALIS ANPRRKRARKIFKQPFIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Potri.004G186500 [exp]	0	1
AT2G13690			PRLI-interacting factor, putat...		Potri.005G058700 [exp]	3.31	0.9228
AT5G24690			Protein of unknown function (D...		Potri.003G019600 [exp]	4.89	0.9324
AT2G43250			unknown protein		Potri.007G124700 [exp]	5.38	0.9077
AT5G37570			Pentatricopeptide repeat (PPR-...		Potri.006G207500 [exp]	6.16	0.9359
AT5G61370			Pentatricopeptide repeat (PPR)...		Potri.012G068400 [exp]	6.92	0.9331
AT2G15690			Tetratricopeptide repeat (TPR)...		Potri.003G058300 [exp]	6.92	0.9336
AT2G45680	TCP	TCP9	TCP family transcription facto...		Potri.001G111800 [exp]	7.07	0.9295
AT1G04555			unknown protein		Potri.008G173000 [exp]	7.34	0.9280
AT4G19110			Protein kinase superfamily pro...		Potri.001G035400 [exp]	7.93	0.9244
AT5G46100			Pentatricopeptide repeat (PPR)...		Potri.011G057900 [exp]	11.22	0.9254

Compare expression of checked genes

Potri.004G186500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.