Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27740 177 / 3e-57 Family of unknown function (DUF662) (.1) AT3G09980 161 / 6e-51 Family of unknown function (DUF662) (.1) AT2G36410 159 / 1e-49 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) AT3G52920 154 / 5e-48 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2) AT3G52900 140 / 1e-42 Family of unknown function (DUF662) (.1) AT5G03660 140 / 2e-42 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2) AT2G36355 128 / 4e-38 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G147500 [exp] 257 / 1e-88 AT2G27740 177 / 4e-57 Family of unknown function (DUF662) (.1) Potri.006G115400 [exp] 160 / 1e-50 AT3G09980 202 / 3e-67 Family of unknown function (DUF662) (.1) Potri.010G235600 [exp] 136 / 2e-41 AT3G09980 128 / 3e-38 Family of unknown function (DUF662) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019529 [exp] 193 / 2e-63 AT2G27740 201 / 9e-67 Family of unknown function (DUF662) (.1) Lus10043372 [exp] 189 / 6e-62 AT2G27740 207 / 6e-69 Family of unknown function (DUF662) (.1) Lus10027724 [exp] 159 / 8e-50 AT2G36410 237 / 1e-80 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10035563 [exp] 159 / 9e-50 AT2G36410 238 / 8e-81 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10023876 [exp] 154 / 2e-48 AT2G36410 239 / 9e-82 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10014379 [exp] 132 / 8e-39 AT2G36410 214 / 4e-71 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10034160 [exp] 118 / 4e-34 AT3G52900 154 / 2e-48 Family of unknown function (DUF662) (.1) Lus10043423 [exp] 117 / 3e-33 AT3G52900 150 / 4e-46 Family of unknown function (DUF662) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04949 [poplar] [flax] Transcrip_act Transcriptional activator
Representative CDS sequence Show only first row Show all	>Potri.004G186900.1 pacid=42795285 polypeptide=Potri.004G186900.1.p locus=Potri.004G186900 ID=Potri.004G186900.1.v4.1 annot-version=v4.1 ATGACGACACAAAAACCAATATTGGAGCAACAACAATCACAAATGCAGATCAGAATGATGAAGAACTCAGGTATTATCAGTAATATCAGTGAAAGCCCAC TATCAAGGGATGATAAGGATGATGAGATGTCAAGATCAGCAGTGGCTATGTTTAGGGCGAAAGAAGAAGAGATTGAGAAGAAGAAGATGGAAGTCAGAGA CAAGGTTCATGCTCACTTAGGACGTGCGGAAGAAGCAACTAAACGATTAGCAGAAATTCGTGAAGAGCTTGAAGCCCTGACAGATCCAATGAGAAAGGAA GTTTCGATGGTACGTAAGAGGATTGACACAGTCAACAGGGAGCTGAAGCCTCTAGGACTGAGTTGCCAGAAGAAGGAAAGAGAATACAAAGAAGCCCTGG AAGCCTTTAATGAAAAGAACAAAGAAAAAGCTCAGCTGGTTTCCAAATTAGTGGAGCTGGCGAGTGAAAGTGAGAAACTGAGGATGAAGAAACTGGAGGA ACTGAGCAAAAATATTGAAACTTTAAGCTGA
AA sequence Show only first row Show all	>Potri.004G186900.1 pacid=42795285 polypeptide=Potri.004G186900.1.p locus=Potri.004G186900 ID=Potri.004G186900.1.v4.1 annot-version=v4.1 MTTQKPILEQQQSQMQIRMMKNSGIISNISESPLSRDDKDDEMSRSAVAMFRAKEEEIEKKKMEVRDKVHAHLGRAEEATKRLAEIREELEALTDPMRKE VSMVRKRIDTVNRELKPLGLSCQKKEREYKEALEAFNEKNKEKAQLVSKLVELASESEKLRMKKLEELSKNIETLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27740			Family of unknown function (DU...		Potri.004G186900 [exp]	0	1
AT1G74690		IQD31	IQ-domain 31 (.1)		Potri.015G063600 [exp]	8.54	0.8888
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Potri.006G187700 [exp]	10.48	0.8677
AT4G24760			alpha/beta-Hydrolases superfam...		Potri.012G090800 [exp]	10.95	0.8732
AT3G56370			Leucine-rich repeat protein ki...		Potri.016G137000 [exp]	12.80	0.8829
AT1G62981			Protein of unknown function (D...		Potri.001G112800 [exp]	21.28	0.8780
AT2G42040			unknown protein		Potri.006G193500 [exp]	24.33	0.8545
AT2G14620		XTH10, XTR14	xyloglucan endotransglucosylas...		Potri.009G083800 [exp]	26.15	0.8338
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Potri.017G110200 [exp]	26.22	0.8606
AT1G12310			Calcium-binding EF-hand family...		Potri.001G117900 [exp]	31.08	0.8612
AT4G02010			Protein kinase superfamily pro...		Potri.002G194850 [exp]	31.36	0.8646

Compare expression of checked genes

Potri.004G186900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.