Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1) AT2G36430 397 / 2e-135 Plant protein of unknown function (DUF247) (.1) AT5G22550 393 / 4e-133 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G47250 367 / 5e-123 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT3G44710 363 / 2e-121 Plant protein of unknown function (DUF247) (.1) AT5G22560 352 / 9e-117 Plant protein of unknown function (DUF247) (.1) AT3G47200 333 / 7e-110 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50170 311 / 9e-101 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G47210 302 / 4e-98 Plant protein of unknown function (DUF247) (.1) AT3G50120 303 / 2e-97 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G013800 [exp] 456 / 2e-158 AT2G36430 508 / 3e-179 Plant protein of unknown function (DUF247) (.1) Potri.005G116100 [exp] 444 / 1e-153 AT2G36430 511 / 4e-180 Plant protein of unknown function (DUF247) (.1) Potri.004G185501 [exp] 318 / 3e-103 AT2G36430 266 / 2e-83 Plant protein of unknown function (DUF247) (.1) Potri.007G047700 [exp] 298 / 1e-95 AT3G50120 721 / 0.0 Plant protein of unknown function (DUF247) (.1) Potri.013G146700 [exp] 252 / 4e-79 AT3G50150 233 / 2e-71 Plant protein of unknown function (DUF247) (.1) Potri.010G144200 [exp] 251 / 6e-79 AT3G50140 245 / 7e-76 Plant protein of unknown function (DUF247) (.1) Potri.003G181600 [exp] 246 / 8e-77 AT2G36430 241 / 5e-75 Plant protein of unknown function (DUF247) (.1) Potri.018G029800 [exp] 246 / 1e-76 AT4G31980 317 / 1e-101 unknown protein Potri.001G046000 [exp] 245 / 2e-76 AT4G31980 232 / 3e-69 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027720 [exp] 398 / 5e-135 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 396 / 3e-134 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10027719 [exp] 361 / 5e-121 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1) Lus10035569 [exp] 353 / 7e-118 AT2G36430 427 / 2e-147 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 305 / 1e-98 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10020563 [exp] 267 / 5e-87 AT3G47250 204 / 2e-62 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) Lus10039780 [exp] 261 / 1e-82 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 253 / 3e-79 AT4G31980 251 / 5e-76 unknown protein Lus10039777 [exp] 244 / 3e-76 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 236 / 9e-73 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.004G187100.1 pacid=42795874 polypeptide=Potri.004G187100.1.p locus=Potri.004G187100 ID=Potri.004G187100.1.v4.1 annot-version=v4.1 ATGGAAATAGAATTAAGGTTCATCGGAGACCAAATACAGGAAAATGCAGGAACCTCTGATGATCATGTCACTAGCATCACGGAGGCAGACAGGCAATGGC TAAAATCAGTGGAAACAAAGACTAAGCTATTGCCAAAATTGTTAAACAATTCAGCCGGCAAGAGCTCTTGTTGCATCTTTAGAGTGCCTCAAAGCCTCTT CGAGATTAACAAGATGGCCTATCAGCCCCATATTGTCTCCATTGGTCCTTACCACCATGGCAAAGTGCATCTCAAGATGATCGAAGAACACAAATGGAGG TTTCTTGGTGGTGTTCTTGCTCGAACACAGCAACATGGTATTGGAATCAACGACTTCTTCAAAGCCATAGCACCGATTGAGGAGAAGATAAGAGATTGTT ACTCTGAGACTATTGAATGTAGCAGACAAGAATTCATTGAGATGATGGTGCTCGATGGATGTTTCATTATTGAGCTCTTCTGCATCGTTGGAGGGATAGT GCAAACAGATATTGATGACCCTATATTCAATATGACACGGATGTTTTTCTTTATCATGCGTGATCTTCTCAGGTTAGAGAACCAAATTCCCTTCTTTGTT CTTGAAACACTGTTCGAGACCTCAATCTTATCTTCAAGAAAACAAAATGTTTCATCCCTTGCGGAACTAGCCTTGGAATTCTTTGATTATGCTGCTCAAA GACCTCCTGAAGTCCTAAGAAGGTATAAAGACATTAGGGGGAAGCATTTACTAGATTTGTTTCGGTCGACTATCATCCCTTCATCCCAAGAAGTGCCTGG AAAGATCAGTCCATTCCTTCAATTGATTCAATCTGCCAAGAAGCTCCATCAAGCTGGAATAAAGTTCAAGCCAAGGGAGACTGACAGCTTCTTGGACATC GAATTCAGCAATGGAGTCCTTGAAATCCCACTTTTAACAGTAGATGATTTCACCACGTCTGTCATACTCAATTGTGTTGCATTTGAACAATGCTATAACC ATTGCTCAAACCACATTACAAGTTATGTTACCTTCATGGGCTGCCTCATCAACGCCCCTAGTGATGCGGGGTTTTTATGTGATTACAAAATAGTTGAGAA TTACTTCGGAACCGACGAGGAAGTTGCTCGTTTCTTTAATAATGTTGGCAAGGATGTTACTTTTGATATTCAGAGGAGTTACCTGTCAAAAGTGTTTGAG GATGTCAACGAGCACTACAGCAACAATTGGCATGTTAGATGGGCAGGGTTCATGCATACTTATTTTGACACCCCATGGTCCTTCATATCAGCTTTAGCTG CAGTTGTTCTACTCATCCTCACTATGATACAGGCCTTCTTTGCTTTCTATGGATATTTCCGTCCTCCTAAACAATAA
AA sequence Show only first row Show all	>Potri.004G187100.1 pacid=42795874 polypeptide=Potri.004G187100.1.p locus=Potri.004G187100 ID=Potri.004G187100.1.v4.1 annot-version=v4.1 MEIELRFIGDQIQENAGTSDDHVTSITEADRQWLKSVETKTKLLPKLLNNSAGKSSCCIFRVPQSLFEINKMAYQPHIVSIGPYHHGKVHLKMIEEHKWR FLGGVLARTQQHGIGINDFFKAIAPIEEKIRDCYSETIECSRQEFIEMMVLDGCFIIELFCIVGGIVQTDIDDPIFNMTRMFFFIMRDLLRLENQIPFFV LETLFETSILSSRKQNVSSLAELALEFFDYAAQRPPEVLRRYKDIRGKHLLDLFRSTIIPSSQEVPGKISPFLQLIQSAKKLHQAGIKFKPRETDSFLDI EFSNGVLEIPLLTVDDFTTSVILNCVAFEQCYNHCSNHITSYVTFMGCLINAPSDAGFLCDYKIVENYFGTDEEVARFFNNVGKDVTFDIQRSYLSKVFE DVNEHYSNNWHVRWAGFMHTYFDTPWSFISALAAVVLLILTMIQAFFAFYGYFRPPKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22540			Plant protein of unknown funct...		Potri.004G187100 [exp]	0	1
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.018G011300 [exp]	1.41	0.9243
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.002G010700 [exp]	2.82	0.8633
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Potri.012G061600 [exp]	4.00	0.8921
AT5G01850			Protein kinase superfamily pro...		Potri.016G134900 [exp]	4.24	0.8628
AT4G05160			AMP-dependent synthetase and l...		Potri.017G112800 [exp]	5.00	0.8804
AT5G47320		RPS19	ribosomal protein S19 (.1)		Potri.013G129600 [exp]	5.47	0.8693
AT5G10030	bZIP	OBF4, TGA4	OCS ELEMENT BINDING FACTOR 4, ...		Potri.007G079900 [exp]	6.24	0.8821	STGA1.2
AT5G43960			Nuclear transport factor 2 (NT...		Potri.014G192900 [exp]	6.32	0.8814
AT4G38260			Protein of unknown function (D...		Potri.004G206300 [exp]	6.48	0.8684
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Potri.001G029800 [exp]	6.78	0.8191

Compare expression of checked genes

Potri.004G187100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.