Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22580 135 / 2e-42 Stress responsive A/B Barrel Domain (.1) AT3G17210 82 / 2e-21 ATHS1 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G148100 [exp] 204 / 7e-70 AT5G22580 118 / 7e-36 Stress responsive A/B Barrel Domain (.1) Potri.010G037500 [exp] 82 / 1e-21 AT3G17210 170 / 2e-56 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G150900 [exp] 81 / 5e-21 AT3G17210 146 / 8e-47 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G151000 [exp] 79 / 4e-20 AT3G17210 134 / 3e-42 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G037200 [exp] 79 / 9e-20 AT3G17210 169 / 4e-55 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G150800 [exp] 49 / 1e-08 AT3G17210 92 / 1e-25 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G150500 [exp] 46 / 2e-07 AT3G17210 100 / 5e-29 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G151200 [exp] 43 / 3e-06 AT3G17210 92 / 1e-25 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020555 [exp] 147 / 4e-47 AT5G22580 133 / 9e-42 Stress responsive A/B Barrel Domain (.1) Lus10009407 [exp] 137 / 3e-43 AT5G22580 122 / 2e-37 Stress responsive A/B Barrel Domain (.1) Lus10037823 [exp] 76 / 4e-19 AT3G17210 170 / 1e-56 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Lus10000094 [exp] 67 / 1e-15 AT3G17210 162 / 6e-53 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0032 [poplar] [flax] Dim_A_B_barrel PF07876 [poplar] [flax] Dabb Stress responsive A/B Barrel Domain
Representative CDS sequence Show only first row Show all	>Potri.004G187500.1 pacid=42794084 polypeptide=Potri.004G187500.1.p locus=Potri.004G187500 ID=Potri.004G187500.1.v4.1 annot-version=v4.1 ATGGGTGCAGGAGCCATGGGAGAGATCAAGCACTTGGTGGTTGTTAAGTTTAAGGAAGGTGTTGCGATCGAGGAAATTATAAAAGGGATGGAGAAGCTGG TTTCAGAGGTTGATCTTGTCAAGTCCTTTGAATGGGGGCAAGATACTGAAGGTCCAGAGATGCTTACTCAAGGCTTTACTCATTCCTTCTCCATGACATT CGACAAGAAGGAAGACTATGCTGCATTTCAGAGCCATCCTAACCATGTTGAATATTCTGCTACATTTTCTGCAGCTATTGAGAAAATTGCGGTGCTTTGT TTCCCATATGTTCGTGTTAAGCCAGCTGCATGA
AA sequence Show only first row Show all	>Potri.004G187500.1 pacid=42794084 polypeptide=Potri.004G187500.1.p locus=Potri.004G187500 ID=Potri.004G187500.1.v4.1 annot-version=v4.1 MGAGAMGEIKHLVVVKFKEGVAIEEIIKGMEKLVSEVDLVKSFEWGQDTEGPEMLTQGFTHSFSMTFDKKEDYAAFQSHPNHVEYSATFSAAIEKIAVLC FPYVRVKPAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22580			Stress responsive A/B Barrel D...		Potri.004G187500 [exp]	0	1
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Potri.006G102600 [exp]	1.00	0.9615
AT5G22580			Stress responsive A/B Barrel D...		Potri.009G148100 [exp]	1.73	0.9417
AT5G50290			unknown protein		Potri.015G078700 [exp]	2.00	0.9413
AT5G35735			Auxin-responsive family protei...		Potri.004G006700 [exp]	3.46	0.9254
AT5G01225			unknown protein		Potri.016G112700 [exp]	6.92	0.8823
AT1G67260	TCP	TCP1	TCP family transcription facto...		Potri.017G112000 [exp]	8.48	0.8936
AT1G77700			Pathogenesis-related thaumatin...		Potri.002G087100 [exp]	9.89	0.9423
AT1G54400			HSP20-like chaperones superfam...		Potri.019G037700 [exp]	11.18	0.9401
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Potri.014G171700 [exp]	11.48	0.8894
AT3G15680			Ran BP2/NZF zinc finger-like s...		Potri.001G172700 [exp]	11.53	0.9234

Compare expression of checked genes

Potri.004G187500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.