Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27770 305 / 2e-103 Plant protein of unknown function (DUF868) (.1) AT5G28150 165 / 4e-49 Plant protein of unknown function (DUF868) (.1) AT3G04860 163 / 2e-48 Plant protein of unknown function (DUF868) (.1) AT2G36470 139 / 6e-39 Plant protein of unknown function (DUF868) (.1) AT4G12690 116 / 1e-30 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) AT5G11000 115 / 2e-29 Plant protein of unknown function (DUF868) (.1) AT2G04220 113 / 4e-29 Plant protein of unknown function (DUF868) (.1) AT3G13229 98 / 9e-24 Plant protein of unknown function (DUF868) (.1) AT5G48270 92 / 2e-21 Plant protein of unknown function (DUF868) (.1) AT2G25200 65 / 1e-11 Plant protein of unknown function (DUF868) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G148300 [exp] 501 / 0 AT2G27770 308 / 7e-105 Plant protein of unknown function (DUF868) (.1) Potri.017G116200 [exp] 282 / 1e-94 AT2G27770 249 / 2e-81 Plant protein of unknown function (DUF868) (.1) Potri.005G050900 [exp] 189 / 1e-58 AT5G28150 417 / 2e-148 Plant protein of unknown function (DUF868) (.1) Potri.013G038000 [exp] 187 / 7e-58 AT5G28150 409 / 6e-145 Plant protein of unknown function (DUF868) (.1) Potri.005G210800 [exp] 168 / 3e-50 AT5G28150 359 / 2e-125 Plant protein of unknown function (DUF868) (.1) Potri.002G051600 [exp] 166 / 1e-49 AT5G28150 364 / 2e-127 Plant protein of unknown function (DUF868) (.1) Potri.004G098000 [exp] 117 / 3e-32 AT2G36470 99 / 3e-25 Plant protein of unknown function (DUF868) (.1) Potri.007G101000 [exp] 120 / 6e-32 AT2G04220 369 / 7e-129 Plant protein of unknown function (DUF868) (.1) Potri.006G261300 [exp] 114 / 5e-29 AT5G11000 295 / 3e-97 Plant protein of unknown function (DUF868) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009405 [exp] 196 / 1e-60 AT2G27770 234 / 5e-75 Plant protein of unknown function (DUF868) (.1) Lus10001787 [exp] 174 / 2e-52 AT5G28150 357 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10014372 [exp] 171 / 5e-51 AT2G27770 201 / 8e-63 Plant protein of unknown function (DUF868) (.1) Lus10020240 [exp] 169 / 2e-50 AT5G28150 356 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10023869 [exp] 162 / 1e-47 AT2G27770 196 / 1e-60 Plant protein of unknown function (DUF868) (.1) Lus10042600 [exp] 130 / 2e-35 AT5G28150 310 / 3e-105 Plant protein of unknown function (DUF868) (.1) Lus10022050 [exp] 127 / 4e-34 AT5G28150 310 / 2e-105 Plant protein of unknown function (DUF868) (.1) Lus10043317 [exp] 107 / 9e-27 AT2G04220 216 / 1e-68 Plant protein of unknown function (DUF868) (.1) Lus10019467 [exp] 106 / 2e-26 AT2G04220 220 / 2e-70 Plant protein of unknown function (DUF868) (.1) Lus10017128 [exp] 101 / 1e-24 AT5G11000 245 / 1e-78 Plant protein of unknown function (DUF868) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05910 [poplar] [flax] DUF868 Plant protein of unknown function (DUF868)
Representative CDS sequence Show only first row Show all	>Potri.004G187600.1 pacid=42793937 polypeptide=Potri.004G187600.1.p locus=Potri.004G187600 ID=Potri.004G187600.1.v4.1 annot-version=v4.1 ATGAGAGATATAGTTTCTTGTTTTAGTGAAAATGCCATACAAGTCTCTCATTCTTCATGTTCTAGTTATTCAAACAATGCTTGTATCTCTCCAAGCCTAA CCCCATCTGTCCAAAATGCAGTCTCTTGCTTCTATAAAATCATCCTCTCAACTAAAAAACAACTCTTGGCCAAAGTGTCTTGGTGCAAAAACCACACTAC TCAAGGCCTCAGCATTAAATTTGGCAATGACCCTTCAACTTCTTTCAAACTCAGCACAAATACCAGGCTCTTTAGAAAGATGAAAGGCAACAAATTGATT GAATCTGATACTGTAAAGATCGAAGTCTTCTGGGATCTTTCTTCTGCTAAATATGAGTTAGGACCTGAACCTGTTGAAGGGTTTTATGTCCTGGTCATGG TTGATTCAGAAATAGGCCTGATATTGGGTGATGTAGGAGAAGAAACTTTGACCAAGAAGTTCAAAACTAGCAGCACCCCAATTGCTAAAGTCACTCTCAT TTCAAGGCAAGAGCATTGTTCAGGCAATACTTTATATGCTACGAAGGCACAGTTTTGTGACACAGGAATTCAACATGACATCGTGATCAGATGTAGTGGA GAAAATGAAGGCTTGAAGCATCCAGTTTTATCTGTATGTATTGATAAGAAGACAGTGATTCGTGTAAAGAGGCTGCAATGGAATTTTAGAGGCAACCAGA CAATTTTTCTTGATGGATTGCTTGTTGATCTGTTGTGGGATGTCCATGACTGGTTCTATAATCCTGGTTCTGGCTATGCTGTTTTCATGTTCAGGACAAG AAGTGGAATGGATAGCAGACTGTGGTTGGAGGAGAAGTTAGTGCAGAAAGATCAAGAAAGAGTTGAATTCTCTTTGTTGATTTATGCCAGTAAGAGCCCT TGA
AA sequence Show only first row Show all	>Potri.004G187600.1 pacid=42793937 polypeptide=Potri.004G187600.1.p locus=Potri.004G187600 ID=Potri.004G187600.1.v4.1 annot-version=v4.1 MRDIVSCFSENAIQVSHSSCSSYSNNACISPSLTPSVQNAVSCFYKIILSTKKQLLAKVSWCKNHTTQGLSIKFGNDPSTSFKLSTNTRLFRKMKGNKLI ESDTVKIEVFWDLSSAKYELGPEPVEGFYVLVMVDSEIGLILGDVGEETLTKKFKTSSTPIAKVTLISRQEHCSGNTLYATKAQFCDTGIQHDIVIRCSG ENEGLKHPVLSVCIDKKTVIRVKRLQWNFRGNQTIFLDGLLVDLLWDVHDWFYNPGSGYAVFMFRTRSGMDSRLWLEEKLVQKDQERVEFSLLIYASKSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27770			Plant protein of unknown funct...		Potri.004G187600 [exp]	0	1
AT1G78940			Protein kinase protein with ad...		Potri.007G001900 [exp]	2.23	0.8190
AT1G30080			Glycosyl hydrolase superfamily...		Potri.011G084900 [exp]	4.69	0.8452
AT5G08350			GRAM domain-containing protein...		Potri.005G088200 [exp]	6.70	0.8401
AT3G52490			Double Clp-N motif-containing ...		Potri.008G017600 [exp]	8.48	0.8426
AT3G27200			Cupredoxin superfamily protein...		Potri.016G015200 [exp]	9.53	0.7949
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Potri.015G093400 [exp]	9.79	0.7916
AT1G43710		EMB1075	embryo defective 1075, Pyridox...		Potri.005G190500 [exp]	9.79	0.7840
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.001G162500 [exp]	10.09	0.8057	PME2.16
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Potri.017G010200 [exp]	11.13	0.7197	MPK6.2
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.001G162600 [exp]	13.41	0.8012

Compare expression of checked genes

Potri.004G187600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.