Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22620 634 / 0 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) AT3G50520 66 / 5e-12 Phosphoglycerate mutase family protein (.1) AT5G04120 59 / 1e-09 Phosphoglycerate mutase family protein (.1) AT1G22170 46 / 3e-05 Phosphoglycerate mutase family protein (.1) AT1G78050 46 / 5e-05 PGM phosphoglycerate/bisphosphoglycerate mutase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G052200 [exp] 169 / 1e-48 AT5G22620 184 / 4e-55 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) Potri.007G040700 [exp] 74 / 2e-14 AT3G50520 327 / 2e-113 Phosphoglycerate mutase family protein (.1) Potri.003G131200 [exp] 47 / 2e-05 AT3G05170 283 / 1e-94 Phosphoglycerate mutase family protein (.1) Potri.005G168000 [exp] 47 / 3e-05 AT1G22170 489 / 3e-175 Phosphoglycerate mutase family protein (.1) Potri.002G093300 [exp] 45 / 7e-05 AT1G22170 495 / 2e-177 Phosphoglycerate mutase family protein (.1) Potri.005G078100 [exp] 44 / 0.0002 AT1G22170 451 / 7e-160 Phosphoglycerate mutase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020553 [exp] 702 / 0 AT5G22620 593 / 0.0 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) Lus10009404 [exp] 423 / 1e-145 AT5G22620 346 / 2e-116 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) Lus10015442 [exp] 165 / 7e-47 AT5G22620 178 / 1e-52 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) Lus10009403 [exp] 123 / 4e-31 AT2G44860 120 / 2e-33 Ribosomal protein L24e family protein (.1.2) Lus10014360 [exp] 50 / 2e-06 AT3G50520 313 / 5e-108 Phosphoglycerate mutase family protein (.1) Lus10026068 [exp] 48 / 1e-05 AT3G50520 312 / 1e-107 Phosphoglycerate mutase family protein (.1) Lus10033465 [exp] 45 / 8e-05 AT1G22170 478 / 8e-171 Phosphoglycerate mutase family protein (.1) Lus10020910 [exp] 45 / 8e-05 AT1G22170 476 / 3e-170 Phosphoglycerate mutase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [poplar] [flax] His_phosphatase PF00300 [poplar] [flax] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Potri.004G187700.1 pacid=42795472 polypeptide=Potri.004G187700.1.p locus=Potri.004G187700 ID=Potri.004G187700.1.v4.1 annot-version=v4.1 ATGCTTTCAGTTTCACCTCCTCCGTCTCTTCCCCTCCTCCACCACCACAACCGCAGCCTCATCCACCACGGAAACCACCGTCTTCTCTTCACAGTCCGTT CATCTTCATCCTCAAGCATCCAAGAAGCTGTAGAGGAAAAAACATCGAATGAAAAGAACTTATTGAGCTCCGAGCTCTACTCCACGACACCGTTTCCTTC AATCAAAGCAGCAAAGAGAGTAATTCTTGTGCGTCACGGGCAAAGCACGTGGAATGAAGAAGGACGGATCCAAGGCAGCTCTGATTTCTCCGTTTTGACT AAGAAAGGCGAGGCTCAAGCCGAGACCTCTCGTCAAATGCTCATCGATGATTCCTTCGATGTTTGCTTCTCCAGTCCTTTGATTCGGTCGAAAAGAACGG CGGAGATCATATGGGGATCGCGAAAGGTGAACATGATTACGGATTCTGATCTGAGAGAAATTGATCTTTATTCATTTCAAGGGTTATTGAAGCATGAGGG GAAGGAGAAGTTCGGAGCAGCGTTTAGGCAATGGCAAGTTGATGCTTCGAATTTTAATATTGATGGCCATTTTCCTGTGAGGGAGTTGTGGGGGCGGGCG AGGAATTGCTGGAATAAAATTCTTGCACATGAAAGTAGGTCTGTTCTTGTGGTTGCTCATAACGCTGTTAATCAGGCTCTTGTTGCTACAGCTATTGGAT TAGGGACGGAGTATTTTAGGATTTTGCTTCAGAGTAATTGTGGTGTGAGTGTGCTGGATTTCGCCCCACGAGTTGATGGGGGAGATGGATCTCCTTATAT TTGTCTTAATCGTTTAAATCAGACACCCAATTCACCTGTTGCTGCTGGAAGTTCTGCAGGCAGAAAAACCAGTAAGCGGATCATACTCGTTTCTCATGGA ACTACACAGGGTGGTACAGAGGCTACCTTTTCAAATTCTGGGAATCAGCCAATGAGCATGCTTGGAATTATACAGTCCCAGAAAACTTCAGAACTGCTTC TTGATCTGAATGTGAGCACCATAGTCAGCAGTCCTAAGAATGCTAGTGTTGAGATGGCAACGACTATCTCCAGAGTGCAAGAAGCTGCAGATTGCTTGGG TGCTGACTGTGTGCCGCGGTGTGTAGAGATGAAACAGATCCAGGAACTTGATGTCAGAGACATCCTTCAACTATCAAACAAGGATGCAACTGAGGTTCCA CCACTTCAGCCTGGATTCTTAAATAGATTTGAGGATGAAGCACTATCAGCACTGTGGGAACAGTCTGGGAAAGCCTGGCAATCTCTGTTAAATGAATTGT CTGATGAATCCAAGTCCGAAAAGATTGTGGTTGCAGTTGGTGATCCTGCCATTCACATTGCATTAATGGGGCACTGCCTAAATCTGACCGAAGACTGGAT GGGATTATTCCATCTCGACGCCGGGAGCATTAGTGTCCTGGACTTTCCTGATGGACCTACTGGTAGAGGGACTATCCGGTGTATAAATTACACGGCTCAT CTGGGAAGATGGTCAATACCCATTACTAGATCAACAATTGACGATGAAGAGTTTTAA
AA sequence Show only first row Show all	>Potri.004G187700.1 pacid=42795472 polypeptide=Potri.004G187700.1.p locus=Potri.004G187700 ID=Potri.004G187700.1.v4.1 annot-version=v4.1 MLSVSPPPSLPLLHHHNRSLIHHGNHRLLFTVRSSSSSSIQEAVEEKTSNEKNLLSSELYSTTPFPSIKAAKRVILVRHGQSTWNEEGRIQGSSDFSVLT KKGEAQAETSRQMLIDDSFDVCFSSPLIRSKRTAEIIWGSRKVNMITDSDLREIDLYSFQGLLKHEGKEKFGAAFRQWQVDASNFNIDGHFPVRELWGRA RNCWNKILAHESRSVLVVAHNAVNQALVATAIGLGTEYFRILLQSNCGVSVLDFAPRVDGGDGSPYICLNRLNQTPNSPVAAGSSAGRKTSKRIILVSHG TTQGGTEATFSNSGNQPMSMLGIIQSQKTSELLLDLNVSTIVSSPKNASVEMATTISRVQEAADCLGADCVPRCVEMKQIQELDVRDILQLSNKDATEVP PLQPGFLNRFEDEALSALWEQSGKAWQSLLNELSDESKSEKIVVAVGDPAIHIALMGHCLNLTEDWMGLFHLDAGSISVLDFPDGPTGRGTIRCINYTAH LGRWSIPITRSTIDDEEF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22620			phosphoglycerate/bisphosphogly...		Potri.004G187700 [exp]	0	1
AT2G46100			Nuclear transport factor 2 (NT...		Potri.002G162800 [exp]	1.73	0.9857
AT1G54520			unknown protein		Potri.005G049500 [exp]	2.82	0.9822
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Potri.014G119700 [exp]	3.00	0.9833
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Potri.001G262400 [exp]	3.74	0.9836	RPL1.2
AT5G03880			Thioredoxin family protein (.1...		Potri.006G213000 [exp]	3.74	0.9802
AT1G18060			unknown protein		Potri.012G052300 [exp]	4.47	0.9822
AT1G68830		STN7	STT7 homolog STN7 (.1)		Potri.008G116800 [exp]	6.70	0.9793
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Potri.013G148900 [exp]	8.12	0.9787	Pt-PETC.2
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Potri.009G029100 [exp]	8.48	0.9760	ALB3.1
AT5G46580			pentatricopeptide (PPR) repeat...		Potri.003G089600 [exp]	8.94	0.9796

Compare expression of checked genes

Potri.004G187700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.