Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44860 249 / 6e-86 Ribosomal protein L24e family protein (.1.2) AT3G53020 77 / 2e-18 RPL24B, STV1 SHORT VALVE1, Ribosomal protein L24e family protein (.1) AT2G36620 77 / 6e-18 RPL24A ribosomal protein L24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G148500 [exp] 342 / 1e-122 AT2G44860 248 / 1e-85 Ribosomal protein L24e family protein (.1.2) Potri.004G085300 [exp] 79 / 4e-19 AT3G53020 199 / 2e-66 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.012G139500 [exp] 78 / 1e-18 AT3G53020 227 / 3e-77 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.012G139400 [exp] 78 / 1e-18 AT3G53020 227 / 3e-77 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.015G141900 [exp] 78 / 2e-18 AT3G53020 196 / 3e-65 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.003G123101 [exp] 76 / 1e-17 AT3G53020 218 / 8e-74 SHORT VALVE1, Ribosomal protein L24e family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020552 [exp] 245 / 3e-84 AT2G44860 240 / 2e-82 Ribosomal protein L24e family protein (.1.2) Lus10009403 [exp] 118 / 1e-32 AT2G44860 120 / 2e-33 Ribosomal protein L24e family protein (.1.2) Lus10008640 [exp] 77 / 4e-18 AT2G36620 243 / 1e-83 ribosomal protein L24 (.1) Lus10035584 [exp] 77 / 5e-18 AT2G36620 241 / 5e-83 ribosomal protein L24 (.1) Lus10024560 [exp] 73 / 1e-16 AT2G36620 238 / 2e-81 ribosomal protein L24 (.1) Lus10032198 [exp] 73 / 1e-16 AT2G36620 240 / 1e-82 ribosomal protein L24 (.1) Lus10006314 [exp] 71 / 2e-15 AT2G36620 233 / 2e-78 ribosomal protein L24 (.1) Lus10029583 [exp] 71 / 3e-15 AT2G36620 232 / 4e-78 ribosomal protein L24 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [poplar] [flax] TRASH PF01246 [poplar] [flax] Ribosomal_L24e Ribosomal protein L24e
Representative CDS sequence Show only first row Show all	>Potri.004G187800.1 pacid=42795869 polypeptide=Potri.004G187800.1.p locus=Potri.004G187800 ID=Potri.004G187800.1.v4.1 annot-version=v4.1 ATGAGGTTGGAGAAGTGTTGGTTCTGCTCCTCGACTGTATACCCGGGGCACGGTATCCAGTTTGTCCGCAATGATGCTAAGATTTTTCGATTTTGTAGAT CCAAGTGCCACAAGAACTTCAAAATGAAGAGGAACCCTCGCAAAGTAAAATGGACCAAGGCCTATAGAAGGTTGCATGGGAAGGACATGACACAGGATAC AACCTTCGAGTTTGAGAGAAAGCGAAATAGGCCTGAGAGATATGATAGGAATCTTGCTGAGAATACTTTGAAGGCTATTAAGAAGATTGATAAGGTCAGA TCCGACCGGGCAGCAAGCCACATAGAGAAGAGGTTGAAGGTCAGGAAAGGCAAGGAGCGGAGAGAGGCACAAAAGGAATTGGAGCAGTCGATTCACTTGG TCAAGGCTCCTCAAGTGCTTCGACAAGACCAATCTCTCACGTTACCCAAGATCAAAGTCGAGGTTTCTCAACCAAAAAGCGAGAAAAATCAGGCAATGGA AGAGTGA
AA sequence Show only first row Show all	>Potri.004G187800.1 pacid=42795869 polypeptide=Potri.004G187800.1.p locus=Potri.004G187800 ID=Potri.004G187800.1.v4.1 annot-version=v4.1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDTTFEFERKRNRPERYDRNLAENTLKAIKKIDKVR SDRAASHIEKRLKVRKGKERREAQKELEQSIHLVKAPQVLRQDQSLTLPKIKVEVSQPKSEKNQAMEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44860			Ribosomal protein L24e family ...		Potri.004G187800 [exp]	0	1
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Potri.001G131000 [exp]	8.42	0.8575	ATBBC1.2
AT2G39840		TOPP4	type one serine/threonine prot...		Potri.008G060800 [exp]	13.26	0.8217	Pt-TOPP4.2
AT1G60770			Tetratricopeptide repeat (TPR)...		Potri.006G157400 [exp]	13.56	0.8004
AT4G36130			Ribosomal protein L2 family (....		Potri.007G013101 [exp]	14.83	0.8426
AT4G33865			Ribosomal protein S14p/S29e fa...		Potri.009G090000 [exp]	15.29	0.8367
AT5G27700			Ribosomal protein S21e (.1)		Potri.013G017600 [exp]	16.43	0.8568
AT5G37350			Serine/threonine-protein kinas...		Potri.015G096100 [exp]	16.73	0.7583
AT1G26880			Ribosomal protein L34e superfa...		Potri.017G082200 [exp]	16.97	0.8424	Pt-RPL34.5
AT1G30580			GTP binding (.1)		Potri.001G465900 [exp]	18.16	0.7827
AT3G53740			Ribosomal protein L36e family ...		Potri.012G142600 [exp]	18.43	0.8449

Compare expression of checked genes

Potri.004G187800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.