Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HDT902,Pt-HD2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44750 122 / 1e-33 HDT1, HDA3, ATHD2A, HD2A HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) AT5G03740 117 / 4e-31 C2H2ZnF HD2C, HDT3 HISTONE DEACETYLASE 3, histone deacetylase 2C (.1) AT5G22650 103 / 6e-26 ATHD2B, HDT2, HDT02, HDA4, HD2B ARABIDOPSIS HISTONE DEACETYLASE 2, histone deacetylase 2B (.1.2) AT2G27840 83 / 5e-19 HDT04, HDA13, HDT4 HISTONE DEACETYLASE 13, histone deacetylase-related / HD-related (.1.2) AT3G12340 48 / 5e-06 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G25340 42 / 0.0003 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G149400 [exp] 196 / 8e-62 AT3G44750 126 / 5e-35 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Potri.006G116500 [exp] 157 / 5e-46 AT5G03740 117 / 8e-31 HISTONE DEACETYLASE 3, histone deacetylase 2C (.1) Potri.007G000500 [exp] 47 / 1e-05 AT3G12340 149 / 1e-38 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020542 [exp] 147 / 8e-45 AT3G44750 123 / 3e-36 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Lus10009390 [exp] 130 / 3e-36 AT3G44750 166 / 1e-50 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Lus10003376 [exp] 125 / 3e-34 AT3G44750 114 / 2e-30 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Lus10020543 [exp] 114 / 3e-30 AT5G22650 136 / 1e-38 ARABIDOPSIS HISTONE DEACETYLASE 2, histone deacetylase 2B (.1.2) Lus10009391 [exp] 115 / 2e-29 AT2G27830 130 / 7e-36 unknown protein Lus10002846 [exp] 109 / 1e-27 AT3G44750 105 / 4e-26 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Lus10020541 [exp] 84 / 1e-19 AT5G03740 83 / 4e-19 HISTONE DEACETYLASE 3, histone deacetylase 2C (.1) Lus10031121 [exp] 44 / 9e-05 AT4G25340 335 / 3e-110 FK506 BINDING PROTEIN 53 (.1.2) Lus10031700 [exp] 41 / 0.0008 AT4G25340 324 / 3e-105 FK506 BINDING PROTEIN 53 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G188800.1 pacid=42794040 polypeptide=Potri.004G188800.1.p locus=Potri.004G188800 ID=Potri.004G188800.1.v4.1 annot-version=v4.1 ATGTCGTCCATGGAGTTCTGGGGTGTTGAAGTCAAGGCTGGTGAGCCTCTTAAAGTGGAACCTAAAGATTTCTATATGATACATCTTTCTCAGGCAGCCC TTGGTGAGTCTTCAAAGAAGGGAAACGAATCAGTTCCCCTTTTCCTAAAGCTCGATGAAAAGAAGCTTGTGTTGGGAACCCTATCTCCTGATAAGATCCC TCAATTGTCCTTTGATTTAGTTTTTGAGAGAGAGTTCGAGCTCTCTCACAACTGGAAAAATGGGAGTGTTTTCTTCTGTGGCTACCAAGCTGCTATTCCT GAAAATGATTCTGATTTTTCTGATGATGGAGATGAAATCCCATTTGAGAAAGTGGAGAATGTGAAGTTTGCTACTGGTACAGATAAAGCTGCCAAGCCTG AAAAACCAAAGGCTAATCCTGTAGTGCCAAGCAAAGATGATGAATCTGACGATGACGATTCTGATGACGATTCTGATGAGGATGATTCAGGCGATGGATC CGAGGGTATGTCTCTTGAAGAAGATTTGGATGATGAATCTGATAGTGAAGATGAAGAGACTCCTAAGAAGGCTGAGCAAAGCAAGAAGAGGACCAGTGAC TCTGCAATAAAGACACCAGTGTCCTCAAAGAAGGCTAAAACTGCTACCCCTCAGAAGACAGATGGTGGGAAGGCTGGGCAAGTAACTCCCCACCCTGCAA AGGGAAAAGCTGCGTCAAATGGCAACAACCCCAAGACCCCAAAGTCCGGTGGCAATTTCTCCTGCAAATCCTGCGAAAGGTCATTTGGCTCTGATGGTGC TCTGAAGTCGCACTCACAAGCCAAGCATGGTGACAAGTGA
AA sequence Show only first row Show all	>Potri.004G188800.1 pacid=42794040 polypeptide=Potri.004G188800.1.p locus=Potri.004G188800 ID=Potri.004G188800.1.v4.1 annot-version=v4.1 MSSMEFWGVEVKAGEPLKVEPKDFYMIHLSQAALGESSKKGNESVPLFLKLDEKKLVLGTLSPDKIPQLSFDLVFEREFELSHNWKNGSVFFCGYQAAIP ENDSDFSDDGDEIPFEKVENVKFATGTDKAAKPEKPKANPVVPSKDDESDDDDSDDDSDEDDSGDGSEGMSLEEDLDDESDSEDEETPKKAEQSKKRTSD SAIKTPVSSKKAKTATPQKTDGGKAGQVTPHPAKGKAASNGNNPKTPKSGGNFSCKSCERSFGSDGALKSHSQAKHGDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Potri.004G188800 [exp]	0	1	HDT902,Pt-HD2.1
AT1G43170		RPL3A, ARP1, EM...	embryo defective 2207, ribosom...		Potri.002G066200 [exp]	4.00	0.8939	Pt-ARP1.2
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Potri.002G099500 [exp]	7.34	0.8874
AT1G57860			Translation protein SH3-like f...		Potri.016G061100 [exp]	8.48	0.9146
AT3G53020		RPL24B, STV1	SHORT VALVE1, Ribosomal protei...		Potri.012G139400 [exp]	10.29	0.9066
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Potri.002G051300 [exp]	16.70	0.9057
AT5G39740		OLI7, RPL5B	OLIGOCELLULA 7, ribosomal prot...		Potri.013G128600 [exp]	17.60	0.8526
AT4G28390		ATAAC3, AAC3	ADP/ATP carrier 3 (.1)		Potri.007G139100 [exp]	18.54	0.8259
AT2G41840			Ribosomal protein S5 family pr...		Potri.016G055000 [exp]	23.13	0.8879	Pt-RPS2.3
AT3G57490			Ribosomal protein S5 family pr...		Potri.006G052400 [exp]	23.95	0.8829	Pt-RPS2.2
AT3G59540			Ribosomal L38e protein family ...		Potri.017G026000 [exp]	24.00	0.8622

Compare expression of checked genes

Potri.004G188800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.