Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATCSLA02.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22740 927 / 0 ATCSLA2, ATCSLA02 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) AT5G03760 810 / 0 ATCSLA9, RAT4, CSLA9, ATCSLA09 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G23480 723 / 0 ATCSLA3, ATCSLA03 cellulose synthase-like A3 (.1.2.3) AT4G13410 697 / 0 ATCSLA15 CELLULOSE SYNTHASE LIKE A15, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT2G35650 680 / 0 ATCSLA7, CSLA7, ATCSLA07 CELLULOSE SYNTHASE LIKE A7, cellulose synthase like (.1) AT1G24070 673 / 0 ATCSLA10 CELLULOSE SYNTHASE LIKE A10, cellulose synthase-like A10 (.1) AT5G16190 633 / 0 ATCSLA11 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE A11, cellulose synthase like A11 (.1) AT3G56000 620 / 0 ATCSLA14 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE A14, cellulose synthase like A14 (.1) AT4G16590 541 / 0 ATCSLA1, ATCSLA01 CELLULOSE SYNTHASE-LIKE A1, cellulose synthase-like A01 (.1) AT4G31590 420 / 8e-140 ATCSLC5, ATCSLC05 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G149700 [exp] 1055 / 0 AT5G22740 910 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) Potri.006G116900 [exp] 835 / 0 AT5G03760 928 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.010G234100 [exp] 833 / 0 AT5G03760 870 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.008G026400 [exp] 814 / 0 AT5G03760 854 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.018G009300 [exp] 426 / 3e-142 AT4G31590 1077 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Potri.006G270900 [exp] 424 / 2e-141 AT4G31590 1085 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Potri.002G114200 [exp] 414 / 2e-137 AT4G07960 1031 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Potri.005G146900 [exp] 412 / 1e-136 AT4G07960 1050 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Potri.014G190900 [exp] 393 / 1e-130 AT3G07330 863 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009387 [exp] 910 / 0 AT5G22740 892 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) Lus10008646 [exp] 818 / 0 AT5G03760 890 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10035580 [exp] 726 / 0 AT5G03760 805 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10020539 [exp] 616 / 0 AT5G22740 612 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) Lus10007715 [exp] 420 / 2e-140 AT4G07960 1010 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Lus10018651 [exp] 419 / 3e-140 AT4G07960 978 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Lus10025886 [exp] 416 / 5e-138 AT3G07330 994 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Lus10020120 [exp] 413 / 6e-138 AT4G31590 1012 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Lus10038217 [exp] 409 / 6e-138 AT3G07330 821 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Lus10026923 [exp] 413 / 6e-137 AT4G31590 1078 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF13632 [poplar] [flax] Glyco_trans_2_3 Glycosyl transferase family group 2
Representative CDS sequence Show only first row Show all	>Potri.004G189000.1 pacid=42794617 polypeptide=Potri.004G189000.1.p locus=Potri.004G189000 ID=Potri.004G189000.1.v4.1 annot-version=v4.1 ATGGGTGAAGTTTCACAAAAAATCATGATACCTGAATCATTTCAGTTTCAGGTCTCAAGCTATGACATTTCAGGTCAGCTTAAACTCATTTGGGATCTAA TCAAAGCACCATTGATAGTTCCTTTGTTGACACTTGGAGTTTACATTTCCTTAGCCATGTCACTCATGCTCTTAATGGAAAGGGTTTACATGGGTATTGT CATCATCCTCGTTAAGCTCTTTTGGAAGAAACCAGAGAAGCGATACAAATGGGAGCCCATGCAAGATGATATAGAATCTGGCAATCTTAACTTCCCTGTT ATTCTTGTTCAAATCCCAATGTTCAACGAAAAAGAGGTTTACAAGCTATCCATTGGTGCAGCCTCTAATCTTTCCTGGCCAGCAGATCGTCTTGTGATCC AAGTCCTAGATGATTCAACCGACCCTGCTATCAAGCAAATGGTAGAGCTAGAGTGTCAAAGATGGGCAAGCAAGGGCATAAACATAAGGTACCAAATCAG GGAGAACAGAACAGGTTACAAGGCTGGTGCTTTAAAGGAAGGTCTAAAGAGAAGCTATGTTAAACACTGCGAGTATGTTTGCATCTTTGATGCTGATTTC CAGCCTGAGCCTGATTTCCTTAGGCGTGCCATTCCATTCTTGGTCCACAATCCTGACGTTGCCCTTGTTCAGGCTCGTTGGAGATTTGTGAATGCAGATG AGTGCTTGTTGACAAGAATGCAAGAAATGTCTTTGGATTACCATTTCACTGTGGAGCAAGAAGTTGGGTCAGCTACTCATGCGTTCTTTGGCTTCAATGG GACTGCTGGAGTATGGAGAATTGCGGCCATTAATGATGCTGGCGGGTGGAAGGACAGAACTACAGTGGAGGACATGGATCTTGCTGTCCGAGCAAGTCTT AGGGGCTGGAAATTTGTGTACCTTGGTGACCTCCATGTGAAAAGTGAACTTCCCAGTACTTTCAAAGCTTTCCGGTTCCAGCAGCACAGGTGGTCCTGTG GTCCTGCTAACCTGTTCAGGAAAATGGTGATGGAGATTGTTAGAAATAAGAGAGTGAATTTCTGGAAAAAAGTCTATGTGATCTATAGCTTTTTCTTCGT TAGAAAGATCATAGCTCACATGGTGACCTTCTGCTTCTACTGTGTTGTTCTCCCATTAACCATTTTGGTTCCTGAAGTGAAAGTTCCGATCTGGGGAGCT GTTTACATCCCTTCTGTCATTACCATTCTAAATTCAGTAGGAACTCCAAGGTCAATTCACTTACTGTTTTACTGGATCCTTTTCGAGAACGTTATGTCTT TGCACCGGACTAAGGCAGCTCTTATCGGTCTGCTTGAAGCTGGAAGAGTCAATGAGTGGGTTGTCACAGAAAAACTAGGAAATACACTTCAGAAAGCAGC AGATGCAAGGAAAGCAAACACCAAAGCACCCAGAAAATTCCGATTCAAATTCACCGACAGAATCAACACATTGGAGCTGGGATTTGCAGCATTTCTTTTC TTGTGTGGATGCTATGACTTTGTTAATGGAAAGAACAACTATTTCATTTACCTTTGGCTCCAAACAGTCACCTTCTTCATCACTGGAATTGGATATGTTG GTACTATTATTCCCAGCTCTTAG
AA sequence Show only first row Show all	>Potri.004G189000.1 pacid=42794617 polypeptide=Potri.004G189000.1.p locus=Potri.004G189000 ID=Potri.004G189000.1.v4.1 annot-version=v4.1 MGEVSQKIMIPESFQFQVSSYDISGQLKLIWDLIKAPLIVPLLTLGVYISLAMSLMLLMERVYMGIVIILVKLFWKKPEKRYKWEPMQDDIESGNLNFPV ILVQIPMFNEKEVYKLSIGAASNLSWPADRLVIQVLDDSTDPAIKQMVELECQRWASKGINIRYQIRENRTGYKAGALKEGLKRSYVKHCEYVCIFDADF QPEPDFLRRAIPFLVHNPDVALVQARWRFVNADECLLTRMQEMSLDYHFTVEQEVGSATHAFFGFNGTAGVWRIAAINDAGGWKDRTTVEDMDLAVRASL RGWKFVYLGDLHVKSELPSTFKAFRFQQHRWSCGPANLFRKMVMEIVRNKRVNFWKKVYVIYSFFFVRKIIAHMVTFCFYCVVLPLTILVPEVKVPIWGA VYIPSVITILNSVGTPRSIHLLFYWILFENVMSLHRTKAALIGLLEAGRVNEWVVTEKLGNTLQKAADARKANTKAPRKFRFKFTDRINTLELGFAAFLF LCGCYDFVNGKNNYFIYLWLQTVTFFITGIGYVGTIIPSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22740		ATCSLA2, ATCSLA...	CELLULOSE SYNTHASE-LIKE A 2, A...		Potri.004G189000 [exp]	0	1	Pt-ATCSLA02.2
AT2G22900			Galactosyl transferase GMA12/M...		Potri.014G006100 [exp]	2.00	0.8892	GT6.2
AT4G00820		IQD17	IQ-domain 17 (.1)		Potri.014G104600 [exp]	2.44	0.8668
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Potri.004G183500 [exp]	4.47	0.8275
AT4G00770			unknown protein		Potri.002G152700 [exp]	6.00	0.7985
AT3G13000			Protein of unknown function, D...		Potri.007G003900 [exp]	7.34	0.8075
AT5G60920		COB	COBRA-like extracellular glyco...		Potri.015G060000 [exp]	9.53	0.7974
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.009G020400 [exp]	10.29	0.7301
AT3G51740		IMK2	inflorescence meristem recepto...		Potri.016G126300 [exp]	11.31	0.8107	Pt-RHG1.4
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Potri.017G014100 [exp]	12.00	0.8187
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Potri.013G149000 [exp]	13.49	0.8125

Compare expression of checked genes

Potri.004G189000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.