Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22750 1506 / 0 RAD5A, RAD5 DNA/RNA helicase protein (.1) AT5G43530 1004 / 0 Helicase protein with RING/U-box domain (.1) AT5G05130 382 / 2e-117 DNA/RNA helicase protein (.1) AT1G61140 357 / 5e-106 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT1G50410 350 / 1e-104 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G05120 325 / 2e-96 Helicase protein with RING/U-box domain (.1) AT3G20010 327 / 1e-95 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G02670 278 / 3e-81 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G16600 268 / 1e-77 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G11100 243 / 5e-66 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083400 [exp] 952 / 0 AT5G43530 1342 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.006G035700 [exp] 367 / 1e-111 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.007G000700 [exp] 344 / 3e-102 AT1G50410 1083 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Potri.016G033800 [exp] 333 / 2e-99 AT5G05130 650 / 0.0 DNA/RNA helicase protein (.1) Potri.011G046400 [exp] 334 / 2e-96 AT1G61140 958 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.016G033700 [exp] 320 / 1e-94 AT5G05130 710 / 0.0 DNA/RNA helicase protein (.1) Potri.016G034000 [exp] 319 / 3e-94 AT5G05130 700 / 0.0 DNA/RNA helicase protein (.1) Potri.014G154600 [exp] 310 / 6e-91 AT1G05120 1058 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.016G033600 [exp] 292 / 1e-84 AT5G05130 674 / 0.0 DNA/RNA helicase protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043365 [exp] 1479 / 0 AT5G22750 1445 / 0.0 DNA/RNA helicase protein (.1) Lus10041156 [exp] 867 / 0 AT5G43530 1222 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10039001 [exp] 398 / 2e-123 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10011211 [exp] 340 / 3e-99 AT1G61140 959 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10041008 [exp] 335 / 6e-99 AT1G50410 1060 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10013452 [exp] 320 / 6e-91 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10030044 [exp] 308 / 4e-89 AT1G05120 1047 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10019523 [exp] 265 / 3e-81 AT5G22750 257 / 3e-79 DNA/RNA helicase protein (.1) Lus10027296 [exp] 215 / 1e-61 AT5G05130 470 / 1e-159 DNA/RNA helicase protein (.1) Lus10018465 [exp] 213 / 2e-56 AT1G61140 546 / 2e-175 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00176 [poplar] [flax] SNF2_N SNF2 family N-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF08797 [poplar] [flax] HIRAN HIRAN domain CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.004G189400.2 pacid=42795003 polypeptide=Potri.004G189400.2.p locus=Potri.004G189400 ID=Potri.004G189400.2.v4.1 annot-version=v4.1 ATGGGAACCAAGGTAACCGAAGAGCTAGTCTCCACCGTCCGATCAATCGTTGGCTGTGATTTCTCCGATATGGACATAATCAGAGCTCTCCACTTGGCAA AAAACGACCCCACCGCTGCAATCAACATCATCCTTGATACCCCGAATTTTATTTCCAAACAAAAAAACCTAACCCCCAAAACCCCAAATCCAAAATCTAA AACCGTACCCTACAAGCCACCAAATCTTGTCGTTAAAGATAACGGAAACCGTAACTCGAGCCAGAATTTAGAAGTCAATTGCGTTGAAAACGACGCGAGT GACAGCACTGTTGGTGATAATGGGAGTGTTTCGGGTTTGGTCGGGAGTGAATGGTGGTTTGTTGGTTGCGGTGAAGTTGCGGGGTTGTCGACGTGTAAAG GGAGGAGAGTGAAGGCTGGTGATGAAGTGGATTTCACATTTCCTTTGAAGAGTAAAAGTTCGATTTCGCCTTCGCCTTCGCCGGGTAAGGGTTCTGGGAG GAGAAGGCAGACTGCGACAGCGTGCTCAGAGATTGTTAGGTTTTCTACGAAAGATAGTGGAGAGCTTGGTCGAATACCTAATGATTGGGCACGGTGTCTT TTGCCGCTTGTTAGAGATGGAAAGGTCAGGATTATGGGATGTTGTAAATCTGCTCCTAACGTTCTAGGCATAATGGATACAATTCAATTATCAATAAGTG TATACTTGAATAGTGTAATGTTCCACAAGCACCACCAGACCTCACTTAAAGCAACTGCCAATTCCACTGAAGAAACAGTCGGTCATCCTCTTTCAATCCT TTTCTGCTTGCTTGGCCTGACCCCTTTTAAGAAGGCAGAATTTACACCTGCTGATTTGAACACAAGGAAGCGACCTCTGAACTCAAAGGATGGTTCTGGT CTTCCCGTGTCATTGTTAAACGCCAACAAGTCTAAGAATCAATCTGGAAATGGAAATGAAATTGAGAATGAGGAGTCCATTTCAGATGCAGATCTTGAGA ATATTGTTGGTGGTGGAGACAGCTCTGAGTTAGAGGAAATGGATCCTCCAAGTACACTCCAATGTGAGCTTCGTCCCTACCAAAAGCAGGCCTTACATTG GATGATTCATCTGGAGAAGGGAAAATGTATGGATGAGGCAGCAACAACTCTTCATCCATGTTGGGAGGCTTATCATTTAGCAGACAAGAGGGAGCTTGTT GTCTATCTGAATGTTTTTTCAGGTGATGCTACAATAGAATTTCCAAGCACACTTCAAATGGCCAGAGGAGGAATTCTGGCAGATGCTATGGGACTTGGGA AGACCATCATGACCATATCCCTCCTACTCACTCATTCAGACAAGGGTGGGTTATCAAATAGTCAATCTGGGAATCAGCTTTGCACTGGAGGTGGTTCAAG TGATAGCTCAGACCAACATCCAAATCAATTGAACAAGGCAACAAAATTTTCAGGCTTTGATAAGTTGAAGCAAAAGAAGATGCTTGTAAATGGTGGCAAT CTAATAATATGTCCAGTGACTCTTCTGGGCCAGTGGAAGGCGGAGTTAGAAATTCATGCCCAACCTGGTTCTTTGTCTGTTTATGTTCATTACGGACAAA GCAGAGTGAAGGATGCAAATTTTCTTGCCCAGAGTAATGTTGTAATAACTACATATGGAGTGTTAGCCTCAGATTTTTCAGCAGAGGATGCTGTAGGGAA TGGGGGACTCTATTCAGTCCATTGGTTTAGAGTGGTTCTTGATGAGGCCCATACCATAAAATCCTCAAAAAGTCAAATTTCGATGGCTGCTGCTGCTCTG GTTGCTGATCGTCGTTGGTGTCTTACTGGGACTCCCATTCAGAACAATGTGGAGGACATTTACAGCCTTCTTCGGTTTTTGAAGGTGGAACCTTGGGGAA ATTGGGCATGGTGGAATAAACTTGTCCAAAAACCATTTGAGGAGGGTGATGAGAGAGGGCTAAAGTTGGTCAAGTCCATCTTAAAACCTATTATGTTAAG GAGAACAAAGACCAGTCGAGATCGAGAGGGCAGGCCAATTCTAGTTCTCCCTCCAGCTGATGTTCAGGTGATTTACTGCCAACTAACAGAAGCTGAAAAA GATTTCTACGAGGCTTTGTTTAAAAAATCCAAGGTTAAGTTTGATCAATTTGTTGAGCAAGGGCGGGTTCTTCATAATTATGCTTCTATTTTGGAATTAC TTTTACGTCTTCGTCAATGCTGTGATCATCCTTTTCTTGTGATGAGTCGAGGTGATACGCAAGAATATTCTGATCTGAACAAGCTAGCTAAACGTTTCCT TAAAGGTGACCAGATTGTCCTTGAAGGAGAAGCAATAAATGTGCCTTCAAGGGCATACATTAAAGAGGTTGTGGAGGAGCTAAGTAAGGGAGAGCAGGGA GAGTGTCCAATCTGTCTCGAGGCATGTGAAGATGCAGTATTGACTCCTTGTGCTCATCGATTGTGTCGAGAGTGTCTCCTGGCAAGTTGGCGAAATGCTA GTTCCGGTTTATGTCCTGTTTGTAGGAAAGCCATCACAAGGCAAGAGCTTATTACAGCTCCGACTGACAGTAGATTCCAGATAGATATTGAGAAAAATTG GGTTGAATCTTCCAAAATTGTGGCTCTCTTGCAAGAACTAGAAATTCTTCGTTTGTCAGGATCTAAAAGCATTCTCTTCAGTCAGTGGACTGCATTTCTG GATCTTTTACAAATCCCTCTTTCCAGGAGTAACATTTCATTTGTTCGTCTTGATGGGACTCTAAACCAGCAGCAGCGTGAAAGAGTTATAAAACAGTTTT CAGAAGATGACAGCATCCTGGTATTGCTGATGTCACTGAAGGCTGGAGGGGTAGGGATAAATTTAACAGCAGCGTCCAATGCCTTTGTTATGGATCCATG GTGGAATCCAGCTGTAGAGGAGCAAGCTGTCATGCGTATTCATCGCATTGGACAAACTAAAAGAGTGATGATCAGGCGGTTCATTGTGAAGGGAACAGTT GAGGAAAGAATGGAAGCAGTGCAAGCGCGCAAGCAGCTAATGATTTCAGGTGCCTTAACTGATCAAGAAGTTCGAACTGCGCGTATTGAAGAGCTGAAGA TGCTGTTTACATAG
AA sequence Show only first row Show all	>Potri.004G189400.2 pacid=42795003 polypeptide=Potri.004G189400.2.p locus=Potri.004G189400 ID=Potri.004G189400.2.v4.1 annot-version=v4.1 MGTKVTEELVSTVRSIVGCDFSDMDIIRALHLAKNDPTAAINIILDTPNFISKQKNLTPKTPNPKSKTVPYKPPNLVVKDNGNRNSSQNLEVNCVENDAS DSTVGDNGSVSGLVGSEWWFVGCGEVAGLSTCKGRRVKAGDEVDFTFPLKSKSSISPSPSPGKGSGRRRQTATACSEIVRFSTKDSGELGRIPNDWARCL LPLVRDGKVRIMGCCKSAPNVLGIMDTIQLSISVYLNSVMFHKHHQTSLKATANSTEETVGHPLSILFCLLGLTPFKKAEFTPADLNTRKRPLNSKDGSG LPVSLLNANKSKNQSGNGNEIENEESISDADLENIVGGGDSSELEEMDPPSTLQCELRPYQKQALHWMIHLEKGKCMDEAATTLHPCWEAYHLADKRELV VYLNVFSGDATIEFPSTLQMARGGILADAMGLGKTIMTISLLLTHSDKGGLSNSQSGNQLCTGGGSSDSSDQHPNQLNKATKFSGFDKLKQKKMLVNGGN LIICPVTLLGQWKAELEIHAQPGSLSVYVHYGQSRVKDANFLAQSNVVITTYGVLASDFSAEDAVGNGGLYSVHWFRVVLDEAHTIKSSKSQISMAAAAL VADRRWCLTGTPIQNNVEDIYSLLRFLKVEPWGNWAWWNKLVQKPFEEGDERGLKLVKSILKPIMLRRTKTSRDREGRPILVLPPADVQVIYCQLTEAEK DFYEALFKKSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEYSDLNKLAKRFLKGDQIVLEGEAINVPSRAYIKEVVEELSKGEQG ECPICLEACEDAVLTPCAHRLCRECLLASWRNASSGLCPVCRKAITRQELITAPTDSRFQIDIEKNWVESSKIVALLQELEILRLSGSKSILFSQWTAFL DLLQIPLSRSNISFVRLDGTLNQQQRERVIKQFSEDDSILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKRVMIRRFIVKGTV EERMEAVQARKQLMISGALTDQEVRTARIEELKMLFT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22750		RAD5A, RAD5	DNA/RNA helicase protein (.1)		Potri.004G189400 [exp]	0	1
AT4G34310			alpha/beta-Hydrolases superfam...		Potri.014G034100 [exp]	1.00	0.9271
AT4G04940			transducin family protein / WD...		Potri.018G148066 [exp]	4.00	0.8506
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.007G071600 [exp]	6.92	0.8762
AT3G54460			SNF2 domain-containing protein...		Potri.003G197701 [exp]	9.79	0.8035
AT3G24000			Tetratricopeptide repeat (TPR)...		Potri.006G001200 [exp]	10.48	0.8735
AT4G39160	MYB		Homeodomain-like superfamily p...		Potri.010G019600 [exp]	10.95	0.8642
AT2G29190		APUM2	pumilio 2 (.1.2)		Potri.001G243400 [exp]	13.49	0.8411
AT1G04210			Leucine-rich repeat protein ki...		Potri.008G158600 [exp]	15.42	0.8555
AT1G15780			unknown protein		Potri.003G028245 [exp]	15.77	0.7755
AT5G53770			Nucleotidyltransferase family ...		Potri.001G400800 [exp]	16.88	0.8370

Compare expression of checked genes

Potri.004G189400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.