Plant FIBer expression Database

Potri.004G189600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G22760 878 / 0 PHD finger family protein (.1)
AT5G35210 840 / 0 metalloendopeptidases;zinc ion binding;DNA binding (.1.2)
AT5G12400 263 / 8e-71 DNA binding;zinc ion binding;DNA binding (.1)
AT4G12750 45 / 0.0006 Homeodomain-like transcriptional regulator (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G150200
[exp]
2712 / 0 AT5G22760 855 / 0.0 PHD finger family protein (.1)
Potri.009G049100
[exp]
306 / 7e-84 AT5G12400 1084 / 0.0 DNA binding;zinc ion binding;DNA binding (.1)
Potri.001G254300
[exp]
288 / 3e-78 AT5G12400 1020 / 0.0 DNA binding;zinc ion binding;DNA binding (.1)
Potri.006G100900
[exp]
43 / 0.0008 AT5G05610 311 / 6e-108 alfin-like 1 (.1.2)
Potri.010G188100
[exp]
43 / 0.0008 AT5G05610 333 / 6e-117 alfin-like 1 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020532
[exp]
1520 / 0 AT5G22760 731 / 0.0 PHD finger family protein (.1)
Lus10009383
[exp]
1496 / 0 AT5G22760 714 / 0.0 PHD finger family protein (.1)
Lus10027346
[exp]
243 / 3e-64 AT5G12400 1029 / 0.0 DNA binding;zinc ion binding;DNA binding (.1)
Lus10014918
[exp]
238 / 6e-63 AT5G12400 1062 / 0.0 DNA binding;zinc ion binding;DNA binding (.1)
Lus10025274
[exp]
45 / 0.0002 AT3G58090 115 / 5e-32 Disease resistance-responsive (dirigent-like protein) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0390 zf-FYVE-PHD PF00628 PHD PHD-finger
CL0390 PF02791 DDT DDT domain
CL0390 PF15612 WHIM1 WSTF, HB1, Itc1p, MBD9 motif 1
Representative CDS sequence
>Potri.004G189600.2 pacid=42793820 polypeptide=Potri.004G189600.2.p locus=Potri.004G189600 ID=Potri.004G189600.2.v4.1 annot-version=v4.1
ATGGAGTCTATGGAGGTGAAGAAAAGGGGTAGAGGTAGACCGAGAAAGCGGAAGCCAAACGAGGAAGAAAGTGAAGAGATGAAATCAATAGCTAATGCTT
TGAAAAAGCAAGCTTTGGATATTAGATGGAAGCCATTAGTGGGTAGGTATGTGTTGAAAGAGTTTGACAGTGGGATTTTTTTGGGGAAGATAGTGAATTA
TGATACTGGGTTGTATAGGGTGGATTATGAGGATGGGGACTGCGAGGATTTAGAGAGTGGTGAGTTGCGTCAGATATTGTTAGGGGATGATGATTTTGAT
GATGAATTGTTTTTTAGGAGGGTCAAGCTAGATGAATTTGTTTTGCAAAAGAGTGAGAAGAGGAAGAAGGAAGCGGAGAAGGATGTGGTGGATTTGAAAA
CGGAGGTGATTAAGGTTGAACCATCGGTGAGTGTTGCGTTGATGGTTGAGAATGGTGGGGTTCAAGTTGAGGATGATGCAGACTCCTCGAGTGATTCATG
TGAGTGTGTGCGGGATGGGGATTTGGGAATGGAAGTGGAGACTCCAGTTATTCCACCACCTCAGTTGCCTTCATCGTCAGCGAGTATAGGTGTGCCAGAC
GAGTATGTCTCACATCTCTTTTCAGTGTACACGTTTTTGAGGTCATTTAATATCCGTCTTTTCTTGAGCCCATTCACACTGGATGATTTAGTGGGGGCGG
TAAATTGCCCTGCTCAGAACACGTTGTTGGATGCCATTCATGTTGCTTTGATGCGGGCATTGAGACGTCATCTTGAAGCACTCTCTTCAGATGGTTCTGA
GCTTGCATCGAAATGCTTGAGGAGCGTGGATTGGCGCTTTCTTGATTCACTTACTTGGACTGTTTATTTGGTCCATTATTTTACAATAATGGGATATGTG
AAGGGATCTGAGTGGAAAGGATTTTATGATAATCTTTGGAAAAGAGAGTATTATTCCTTGCCAGTGGGTAGGAAGCTGATGATTCTGCAAATCCTATGTG
ATGATGTTTTGGACTCAGCAGATGTAAGAGCTGAAGTTGATGTACGTGAAGAGTCAGAATTTGGTATAGATCCAGATACTGTTACAACCAATCTTCCTGA
TAATGGACATGGACCAAGAAGGGTTCATCCCAGATATTCCAAGACTTCAGCTTGCAAGGATAGGGAGGCCATGAATATCATTGCTGAAAGCCAAGGCAGC
AAGTCTTTCAGTAATTCAATGTACCTGGCCTCCAAAGGTGCTGAAAGGGATGGGAATGTATCTGATGCTGATGTAGATGGGAATGGGGATGAATGCCGCC
TTTGTGGCTTGGATGGAACCTTACTTTGCTGTGATGGGTGCCCTTCATCATATCATTCAAGATGTATAGGCGTTGTCAAAATGTATATACCTGAAGGTCC
ATGGTATTGTCCGGAGTGCACCATCAACAAGTTGGGACCTACTATTACAATGGGAACATCACTTAGAGGAGCAGAAGTATTTGGAATTGATTTGTATGAG
CAAGTCTTCTTGGGTACTTGTGATCACTTACTTGTGCTGAAAGCGTCTACAAGTGGAGAACCGTGTTTCAGATACTACAATCAGATGGACATCCAAAAGG
TCCTGCAAGCACTTTCCGAATCCATGCAACATAGATCACTATACTTAGAGATTTGCAAGGCAATTGCACAACACTGGAACATGCCACAAAGTGCATTCTC
ACTGTTGGAAACAACAGGAAGAGGTTTCGATATTGCATCTGTTGAGGAAGATGCAAAACTTTCTGCTCTATCTCTTCCTCGTGAGGAAAGCCGTAAAGTT
GTAGACAATGTTGTGGCTGAGAATGCAGTTAGTGTAAATGGAAGCAATACAGATATTGTAGCAATTCCAAGTCTTGAAACCTCTCTTGATGCAGTAATTC
AAGCTGGTCCTCAGTACATTGTGAGCGATGGTGATGTGTCGAGAACAGGATATTTCCATCTTATGAGAATGAAGCCGCATGAGCAGATTAAACTGGAGTC
TACTGAATCAGTTAACCAGTTAGCTGATCCATCTGATATAACCCAGCAAAGCCTGGTTCACAGATCAAGTGCAATGGAACTTGCCACTTGCACATCAGCA
AACAGTGTTGGCAGTCGTATTGAGAATGGAAATGGTACTTGTTTACCAGCTTCTGTGTTTTCTCAAAACAAGGAAGGGAATCATCAAGGCATTCAAAGGG
TTCGAAATTCAACAAACAATTGTTCTTATGTGGGAACTTTTTTCAAACCACATGCATACATAAATCACTACATGCATGGAGATTTTGCAGCCTCCGCTGC
TGTTAATCTCAATGTTCTTTCATCTGAGGAAAGCCGCACAGAGACTCATAAATCAGGCAATGGAAGGAAAGTTGTTACTGACATTTTATTGCAAGCAAAA
GCTTTTTCAACAGCAGCCTCTCGTTTTTTCTGGCCAAGTTCTGAAAGAAAGCTTGTGGAAGTGCCAAGAGAGAGGTGTGGTTGGTGTTATTCTTGCAAGC
TGCCCTCCAGCAATCGAAGGGGATGCATGTTAAACTCAGCTGCCTTGACTGCTACTAAAGGTGCCTTGAAGGTGATCAGTGGACTTCGCCCAATTTTGAA
TGGAGAGGGAAGTCTTTCTAGCATATCAACGTACATTCTATACATGGGGGAGGTTTTATGTGGTCTTACAACTGGTCCCTTTCTGAGTGCAAGTCACCGA
AAACTGTGGCGTAGACAAGTAGAAGATGCTTCAACTTATAGCGCAATAAAACAGCCATTGCTTGAACTTGAGGAAAACACCCGTCTTGTTGCTCTTTCTG
GGGACTGGGTCAAGGCAATGGACGATTGGTTGGTTGAATCTCCAATGACCCAAAGTTCTGCAATCAGTATTGGAACTGCTCACCGACGAAGAGTGAATGG
GAAACGACATAAGAAACATTCTGGGGTGACTGATACTACAGCAGATGGTTGCCATGACAAAAGTTTTGTCTGGTGGCGAGGAGGGAAGCTATTAAAACTT
GTTTTTAATAAAGCAATCTTGCCTCAGTCAATGGTTAGAAGGGCAGCTAGGCAAGGTGGCTCGAGAAAGATTTCTGGGATCCATTACACTGATGATTTGG
AGATTCCTAATAGAAGCAGACAGTTGGTTTGGAGAGCTGCAGTTGAAAGGAGTAATAATGCATCACAACTTGCACTTCAGGTCAGATACCTAGACTTTCA
TGTTAGATGGAGTGATCTTGTTCGTCCAGAGCAGAACCTCCAGGATGGAAAAGGTTCGGAGACCGAGTCATCTGTTTTTAGAAATGCTGTCATCTGTGAT
AAGAAAATTGAAGAAAAGAAGACTAGGTATGGAATTGCTTTTGGGAACCAAAAGCATCTTCCTTCCCGCATCATGAAGAATATAATTGAAATCGAGCAAA
GTGAAAATGGAAAGGATAAGTATTGGTTTTCTGAAATGCACGTTCCTTTATATTTGATCAAAGAGTTTGAAGAAAGCTTAGATGAAGTCGTTCCACCTTC
AGCCAAGAAGCCTTCAAATGAGTTATCTGTGTTGCAAAGAAGACAATTGAAAGATTCTCGCAGGGATATATTTTCATATCTTGCCTCTAAGAGAGATAAG
TTGGACAGTTGCTCTTGTGCTTCATGTCAATATGATGTTTTAATTAGGGATACGGTCACGTGCAGTTCTTGCCAAGGTTACTGTCATCAAGCCTGTACTG
TAAGTTCAAGAATTTATACAAACGAGGAAGCTCAGTTTTCAATCATTTGCAAGCGATGCTACAGTGCCAGAGCTGTTATTTATGATGAAAAGAGGAATGA
ATCTCTAACCAGCCCCTTGCCCTTGCAATGGCAAGAACATCATAATGCAGTGACAGTCATGAAAAGCACCAGGATTAAACTTCATAATCAACCATTTATG
TCTGTCAGAACCCAGGAGAGTTGTTCTGAAGTGAAACAAGCTACCTCTACTTCTAGTAAGGCTACAAAAACCAAAAGTAGGACCCAGGTTAGTGGCTCTG
AAGTGAAACAAGCTATTTCCTCATCTAGGAAGGCAACAAAAACTGAAAGTAGATCACGTAATTGGGGCATCATATGGAGGAAGAAGAACAACGAGGATAC
AGGCATTGATTTCAGATATAAAAACATTCTATCAAGGGGCAGTCCAAATGGAAAACGGTTAATGCCAGAGTGTAATCTATGCAGAAAGGAATATAACTGT
GATCTGATGTATATCCACTGCGAGACTTGTGCAAATTGGTTTCATGCCGAAGCTGTTGAACTTGAAGAGTCAAAACTCTCTGATGTTATAGGCTTCAAGT
GTTGCAAATGTCGGAGGATAAAATCACCAAATTGTCCTTACAGGGATGGTTATGGAGATGAGAAGCCAGAGGTTCTGACGCCGCGAAAGAGAGCATGGGA
GCAAGGAATAGGAGCTGACTCTGGAACTATTGTTGAATCCAGAGACTGTGAGCCAACTACTCCAATGTTTCCTGTGGAGAATGTTTACGTACAGGATGAT
GATCCTCTTCTTTTCTCCCTTTCAAGAGTTGAGCAAATTACAGAGCAGAATTCTAGAGTGGATTTTGAACGGAACATTGCTGGACAAGGGCCGCAGAAGC
TTCCAGTCAGAAGACAAGGGAAGCGTCAAGGAGATGCTGAAGATATTTCTGTGTCTAATCTTTACCCTACTGATTCATCCATGTTTCTTGAAACAAACAA
CAACGTGAACAAAGAGATGTCTTGTGCTGAATGGGATGTTTCCGGCAATGGCCTTGACAGTGATATGGTGTTTGATTATGAAGATGTAAACTATGAGGAT
ATGGCGTTTGAGCCACAGACATATTTCTCGTTTACGGAGTTGCTGGCAACTGATGATGGTAGCCAATTGGATGGGTTTGATGCCACTGGGAATGTTTTGG
GAAACAATGAAAATCAGTTTCATGCAGCTTCAGAGGACGAGTTCCAGAAGCAACATACACTTGGTACTTCATGCGACATGTCTTTGGAATCTGCTCCTAA
CACAAAGCCATGTAAGATGTGTTTGGACTCGGTACCATCTCCTGATCTTTCTTGTGATGTATGTGGCTTAATGTTACACCGCTATTGTTCTCCTTGGGTG
GAGTCTTCACCTGTTGAAGGCAGCAGCAGCTGGAGGTGTGGCAATTGCCGAAAGTGGCGGTAG
AA sequence
>Potri.004G189600.2 pacid=42793820 polypeptide=Potri.004G189600.2.p locus=Potri.004G189600 ID=Potri.004G189600.2.v4.1 annot-version=v4.1
MESMEVKKRGRGRPRKRKPNEEESEEMKSIANALKKQALDIRWKPLVGRYVLKEFDSGIFLGKIVNYDTGLYRVDYEDGDCEDLESGELRQILLGDDDFD
DELFFRRVKLDEFVLQKSEKRKKEAEKDVVDLKTEVIKVEPSVSVALMVENGGVQVEDDADSSSDSCECVRDGDLGMEVETPVIPPPQLPSSSASIGVPD
EYVSHLFSVYTFLRSFNIRLFLSPFTLDDLVGAVNCPAQNTLLDAIHVALMRALRRHLEALSSDGSELASKCLRSVDWRFLDSLTWTVYLVHYFTIMGYV
KGSEWKGFYDNLWKREYYSLPVGRKLMILQILCDDVLDSADVRAEVDVREESEFGIDPDTVTTNLPDNGHGPRRVHPRYSKTSACKDREAMNIIAESQGS
KSFSNSMYLASKGAERDGNVSDADVDGNGDECRLCGLDGTLLCCDGCPSSYHSRCIGVVKMYIPEGPWYCPECTINKLGPTITMGTSLRGAEVFGIDLYE
QVFLGTCDHLLVLKASTSGEPCFRYYNQMDIQKVLQALSESMQHRSLYLEICKAIAQHWNMPQSAFSLLETTGRGFDIASVEEDAKLSALSLPREESRKV
VDNVVAENAVSVNGSNTDIVAIPSLETSLDAVIQAGPQYIVSDGDVSRTGYFHLMRMKPHEQIKLESTESVNQLADPSDITQQSLVHRSSAMELATCTSA
NSVGSRIENGNGTCLPASVFSQNKEGNHQGIQRVRNSTNNCSYVGTFFKPHAYINHYMHGDFAASAAVNLNVLSSEESRTETHKSGNGRKVVTDILLQAK
AFSTAASRFFWPSSERKLVEVPRERCGWCYSCKLPSSNRRGCMLNSAALTATKGALKVISGLRPILNGEGSLSSISTYILYMGEVLCGLTTGPFLSASHR
KLWRRQVEDASTYSAIKQPLLELEENTRLVALSGDWVKAMDDWLVESPMTQSSAISIGTAHRRRVNGKRHKKHSGVTDTTADGCHDKSFVWWRGGKLLKL
VFNKAILPQSMVRRAARQGGSRKISGIHYTDDLEIPNRSRQLVWRAAVERSNNASQLALQVRYLDFHVRWSDLVRPEQNLQDGKGSETESSVFRNAVICD
KKIEEKKTRYGIAFGNQKHLPSRIMKNIIEIEQSENGKDKYWFSEMHVPLYLIKEFEESLDEVVPPSAKKPSNELSVLQRRQLKDSRRDIFSYLASKRDK
LDSCSCASCQYDVLIRDTVTCSSCQGYCHQACTVSSRIYTNEEAQFSIICKRCYSARAVIYDEKRNESLTSPLPLQWQEHHNAVTVMKSTRIKLHNQPFM
SVRTQESCSEVKQATSTSSKATKTKSRTQVSGSEVKQAISSSRKATKTESRSRNWGIIWRKKNNEDTGIDFRYKNILSRGSPNGKRLMPECNLCRKEYNC
DLMYIHCETCANWFHAEAVELEESKLSDVIGFKCCKCRRIKSPNCPYRDGYGDEKPEVLTPRKRAWEQGIGADSGTIVESRDCEPTTPMFPVENVYVQDD
DPLLFSLSRVEQITEQNSRVDFERNIAGQGPQKLPVRRQGKRQGDAEDISVSNLYPTDSSMFLETNNNVNKEMSCAEWDVSGNGLDSDMVFDYEDVNYED
MAFEPQTYFSFTELLATDDGSQLDGFDATGNVLGNNENQFHAASEDEFQKQHTLGTSCDMSLESAPNTKPCKMCLDSVPSPDLSCDVCGLMLHRYCSPWV
ESSPVEGSSSWRCGNCRKWR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G22760 PHD finger family protein (.1) Potri.004G189600
[exp]
0 1
AT4G32620 Enhancer of polycomb-like tran... Potri.006G246200
[exp]
3.74 0.8183
AT4G12780 Chaperone DnaJ-domain superfam... Potri.014G197600
[exp]
4.69 0.7722
AT3G15470 Transducin/WD40 repeat-like su... Potri.011G122500
[exp]
7.21 0.7267
AT5G04240 JUMONJI ELF6 EARLY FLOWERING 6, Zinc finger... Potri.008G037800
[exp]
13.41 0.6889
AT2G44710 RNA-binding (RRM/RBD/RNP motif... Potri.014G051500
[exp]
14.28 0.7125
AT4G03550 ATGSL5, PMR4, G... POWDERY MILDEW RESISTANT 4, gl... Potri.013G131300
[exp]
15.42 0.6615
AT4G32620 Enhancer of polycomb-like tran... Potri.018G034900
[exp]
16.58 0.7233
AT5G44800 PKR1, CHR4, MI-... PICKLE RELATED 1, chromatin re... Potri.003G110100
[exp]
18.16 0.7588
AT5G55060 unknown protein Potri.011G089300
[exp]
22.44 0.6835
AT1G13980 VAN7, EMB30, GN VASCULAR NETWORK 7, GNOM, EMBR... Potri.017G078800
[exp]
22.49 0.6835 GN.2

Potri.004G189600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.