Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22770 1659 / 0 ALPHA-ADR alpha-adaptin (.1.2.3) AT5G22780 1655 / 0 Adaptor protein complex AP-2, alpha subunit (.1) AT1G60070 273 / 5e-78 Adaptor protein complex AP-1, gamma subunit (.1.2) AT1G23900 272 / 2e-77 GAMMA-ADAPTIN 1, GAMMA-AD, GAMMA-ADR, GAMMA-ADAPTIN1 gamma-adaptin 1 (.1.2) AT1G31730 191 / 7e-50 Adaptin family protein (.1) AT1G23940 111 / 2e-25 ARM repeat superfamily protein (.1) AT1G48760 87 / 4e-17 PAT4, DELTA-ADR PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) AT4G11380 48 / 4e-05 Adaptin family protein (.1.2) AT4G23460 48 / 4e-05 Adaptin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G150300 [exp] 1848 / 0 AT5G22780 1640 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Potri.016G104700 [exp] 268 / 8e-76 AT1G60070 1329 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.006G092800 [exp] 267 / 1e-75 AT1G60070 1356 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.004G235200 [exp] 197 / 2e-51 AT1G31730 1392 / 0.0 Adaptin family protein (.1) Potri.015G045600 [exp] 100 / 3e-21 AT1G48760 870 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.012G055000 [exp] 99 / 7e-21 AT1G48760 815 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.003G130400 [exp] 49 / 3e-05 AT4G23460 1471 / 0.0 Adaptin family protein (.1) Potri.001G101400 [exp] 48 / 4e-05 AT4G23460 1486 / 0.0 Adaptin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020522 [exp] 1773 / 0 AT5G22780 1689 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10005371 [exp] 1758 / 0 AT5G22780 1679 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10019520 [exp] 1727 / 0 AT5G22780 1672 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10043363 [exp] 1719 / 0 AT5G22780 1659 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10012988 [exp] 270 / 9e-77 AT1G60070 1397 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10029177 [exp] 266 / 2e-75 AT1G60070 1389 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10030640 [exp] 221 / 1e-59 AT1G60070 1322 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10030848 [exp] 204 / 2e-54 AT1G60070 1288 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10035684 [exp] 190 / 2e-49 AT1G31730 1312 / 0.0 Adaptin family protein (.1) Lus10037272 [exp] 190 / 3e-49 AT1G31730 1341 / 0.0 Adaptin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01602 [poplar] [flax] Adaptin_N Adaptin N terminal region CL0545 [poplar] [flax] APCOP-app_sub PF02296 [poplar] [flax] Alpha_adaptin_C Alpha adaptin AP2, C-terminal domain CL0159 [poplar] [flax] E-set PF02883 [poplar] [flax] Alpha_adaptinC2 Adaptin C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.004G189700.1 pacid=42794877 polypeptide=Potri.004G189700.1.p locus=Potri.004G189700 ID=Potri.004G189700.1.v4.1 annot-version=v4.1 ATGGCGTTATCAGGCATGAGAGGTCTCTCTGTCTTTATAAGCGATATTCGAAATTGTCAAAACAAAGAGCAAGAAAGGCTTCGCGTCGATAAAGAGCTTG GCAATATCCGCACTCGTTTCAAAAGCGAAAAGGGTTTGACTCATTATGAAAAGAAGAAATATGTTTGGAAAATGCTTTACATTCACATGCTAGGCTATGA TGTAGATTTTGGTCACATGGAAGCTGTTTCCTTAATATCTGCGCCGAAGTACCCTGAAAAGCAGGTTGGGTACATAGTGACATCATCTTTGCTAAATGAG AACCATGATTTTCTGAGATTAGCAATAAATACAGTGCGCAATGATATTATTGGTCGGAATGAAACTTTTCAGTGCCTGGCTTTGACTATGGTTGGGAATA TTGGTGGAAGAGAATTTGCTGAATCTTTGGCACCAGATGTTCAAAAGTTACTCATTTCTAGTAGCTGCAGGCCGCTTGTGAGAAAGAAGGCTGCATTATG TTTGCTGCGCTTGTACAGAAAAAATCCAGATGTCGTCAATATTGATGGCTGGGCGGATCGGATGGCACAACTGCTAGATGAACGTGATCTTGGTGTTTTG ACGTCTTCTACGAGCCTTCTTGTTGCTTTAGTGTCAAATAACCATGAGGCATACTGGAGTTGTCTACCAAAGTGTGTTAAGATATTGGAGCGACTTGCGA GGAACCAAGATATCCCACAAGAATACACTTATTATGGTATCCCATCTCCTTGGCTTCAGGTTAAGGCAATGAGGGCGCTTCAGTACTTTCCAACTATTGA AGATCCTAATGTTAGAAGATCCTTGTTTGAGGTCTTACAGCGGATACTAATGGGAACTGATGTTGTAAAAAATGTAAATAAGAACAATGCATCACATGCT GTTCTCTTTGAAGCCCTTGCTCTTGTAATGCATCTTGATGCTGAAAAGGAGATGATGTCTCAGTGTGTTGCCCTTCTTGGCAAGTTTATTGCTGTACGTG AACCAAATATCCGATATCTTGGCTTGGAGAATATGAGTCGGATGTTGATGGTTACAGATGTGCAAGATATCATTAAAAGACATCAGGCTCAGATCATTAC CTCGTTGAAAGATCCTGACATCAGTATCCGTCGACGTGCTCTTGATTTACTCTATGGTATGTGTGATGTTTCAAATGCAAAGGACATAGTGGAAGAGCTG TTGCAGTATCTTAGCGCAGCAGATTTTGCAATGCGTGAGGAGCTGTCTCTTAAAGCTGCCATTCTTGCCGAAAAGTTTGCTCCTGATTTGTCTTGGTATG TGGATGTGATACTTCAATTGATTGACAAGGCAGGGGATTTTGTCAGTGATGATATATGGTTTCGTGTTGTGCAGTTTGTTACAAACAATGAAGACCTACA GCCTTATGCAGCAGCAAAAGCCAGAGAGTATCTTGACAAGCCTGCCATACATGAGACCATGGTCAAGGTCAGTGCATATCTCCTTGGAGAATACAGCCAC CTTTTGGCCAGAAGGCCTGGTTGTAGTCCAAAGGAAATATTTAGTGTCATACACGAGAAGCTCCCTACTGTATCAACTACAACCATTCCAATTCTTCTTT CCACATATGCTAAGATCTTAATGCACACTCAACCTGCGGACCCAGAACTACAAAAAATTGTCTGGGCAATATTTAGCAAATATGAGAGTTGCATTGATGT TGAGATACAACAACGAGCAGTTGAGTATTTTGCATTAAGTAGGAAGGGTGCAGCTCTAATGGACATTTTGGCTGAAATGCCTAAATTCCCTGAGCGTCAG TCTGCATTGTTAAAAAAAGCTGAGGATGCTGAAGTAGATTCTGCAGAGCAAAGTGCTATTAAGTTGCGGGCACAGCAGCAAATGTCTAATGCATTGGTTG TAACAGACCAACGGCCTGCTAATGGCGCACCTCAAATTGTTGGCGAGCTTAGTCTAGTAAAAATTCCCAGCATGAGTGATGATCAGCATACTTCGGCAGA CCAAGGATTGTCCCAGGCAAATGGGACTTTGACTACAGTAGATCCTCAACCTGCTTCAGGAGATCTCCTAGGTGATCTCCTGGGTCCACTGGCTATTGAA GGACCTCCTGGAGCTATCCAATCTGAGCCAAATGCAGTTTCTGGACTGGAAGGGGTTCCAAGTTCAGCGGACTATGCAGCCATTGTTCCTGTAGGAGAGC AAACCAATACTGTTCAGCCAATTGGAAATATCAACGAAAGATTTTATGCTTTGTGCTTGAAGGATAGTGGTGTTTTATATGAGGATCCAAACATTCAGAT TGGTATTAAAGCAGAGTGGCGAGCGCATCAAGGACGTCTTGTCCTTTTCTTGGGAAACAAAAACACTTCTCCACTTGTTTCTGTTCAGGCTCTGATACTA CCCCCTGTCCATTTAAAAATAGAGCTCTCCTTAGTACCTGAAACTATTCCTCCACGGGCACAGGTGCAATGCCCGCTTGAATTAATGAATCTCCACCCAA GCAGGGATGTCGCTGTTCTTGACTTCTCTTACAAGTTTGGTACAAACATGGTCAATGTCAAGCTTCGGCTTCCAGCTGTTCTAAACAAATTTCTACAGCC TATTTCAGTATCTGCTGAAGAGTTTTTCCCACAATGGAGATCACTTTCAGGACCACCACTGAAGCTTCAAGAAGTAGTTAGAGGCGTTAGGCCATTGCCT CTCATTGAAATGACAAATCTATTTAACAGTTTGAGGTTGACAGTTTGTCCGGGGCTTGATCCAAACCCCAACAACCTGGTTGCAAGTACAACTTTCTACT CGGAGAGTACACGGCCCATGCTTTGCTTGATAAGAATTGAAACAGACCCAGCAGATCTAACGCAATTGCGGATGACGGTTGCCTCAGGGGACCCAACACT GACATTAGAGCTCAAGGAGTTTATCAAAGAACAATTAGTTAGTATTCCTACAGCATCACGTCCACCTGCACCGGCACCAGCAGCAGCTCAGCCAACCAAT CCGGCAGCTTTGACAGATCCCGGGGCTCTGCTGGCTGGTTTGCTGTAA
AA sequence Show only first row Show all	>Potri.004G189700.1 pacid=42794877 polypeptide=Potri.004G189700.1.p locus=Potri.004G189700 ID=Potri.004G189700.1.v4.1 annot-version=v4.1 MALSGMRGLSVFISDIRNCQNKEQERLRVDKELGNIRTRFKSEKGLTHYEKKKYVWKMLYIHMLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSSLLNE NHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLLISSSCRPLVRKKAALCLLRLYRKNPDVVNIDGWADRMAQLLDERDLGVL TSSTSLLVALVSNNHEAYWSCLPKCVKILERLARNQDIPQEYTYYGIPSPWLQVKAMRALQYFPTIEDPNVRRSLFEVLQRILMGTDVVKNVNKNNASHA VLFEALALVMHLDAEKEMMSQCVALLGKFIAVREPNIRYLGLENMSRMLMVTDVQDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEEL LQYLSAADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKPAIHETMVKVSAYLLGEYSH LLARRPGCSPKEIFSVIHEKLPTVSTTTIPILLSTYAKILMHTQPADPELQKIVWAIFSKYESCIDVEIQQRAVEYFALSRKGAALMDILAEMPKFPERQ SALLKKAEDAEVDSAEQSAIKLRAQQQMSNALVVTDQRPANGAPQIVGELSLVKIPSMSDDQHTSADQGLSQANGTLTTVDPQPASGDLLGDLLGPLAIE GPPGAIQSEPNAVSGLEGVPSSADYAAIVPVGEQTNTVQPIGNINERFYALCLKDSGVLYEDPNIQIGIKAEWRAHQGRLVLFLGNKNTSPLVSVQALIL PPVHLKIELSLVPETIPPRAQVQCPLELMNLHPSRDVAVLDFSYKFGTNMVNVKLRLPAVLNKFLQPISVSAEEFFPQWRSLSGPPLKLQEVVRGVRPLP LIEMTNLFNSLRLTVCPGLDPNPNNLVASTTFYSESTRPMLCLIRIETDPADLTQLRMTVASGDPTLTLELKEFIKEQLVSIPTASRPPAPAPAAAQPTN PAALTDPGALLAGLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22770		ALPHA-ADR	alpha-adaptin (.1.2.3)		Potri.004G189700 [exp]	0	1
AT3G60860			SEC7-like guanine nucleotide e...		Potri.002G149200 [exp]	4.89	0.7145
AT3G06540		AthREP	Rab escort protein (.1)		Potri.005G030000 [exp]	10.67	0.7387
AT1G19110			inter-alpha-trypsin inhibitor ...		Potri.018G062500 [exp]	12.44	0.7249
AT1G30410		ATMRP13, ABCC12	ATP-binding cassette C12, mult...		Potri.004G034700 [exp]	14.62	0.7517	ATMRP12.4
					Potri.016G000700 [exp]	16.91	0.7145
AT4G37030			unknown protein		Potri.007G042400 [exp]	19.36	0.6823
AT2G46225		ABIL1, ABI1L1	ABI-1-like 1 (.1.2.3)		Potri.002G165900 [exp]	24.00	0.7028
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Potri.015G089300 [exp]	26.07	0.7159	ATGSL08.2
AT1G19850	ARF	IAA24, ARF5, MP	MONOPTEROS, indole-3-acetic ac...		Potri.002G024700 [exp]	31.65	0.7209
AT1G09060			Zinc finger, RING-type;Transcr...		Potri.013G019000 [exp]	31.68	0.7379

Compare expression of checked genes

Potri.004G189700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.