Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44820 835 / 0 Phototropic-responsive NPH3 family protein (.1) AT1G30440 522 / 8e-179 Phototropic-responsive NPH3 family protein (.1) AT5G03250 448 / 8e-151 Phototropic-responsive NPH3 family protein (.1) AT5G13600 426 / 2e-142 Phototropic-responsive NPH3 family protein (.1) AT5G66560 399 / 1e-130 Phototropic-responsive NPH3 family protein (.1) AT3G50840 360 / 9e-117 Phototropic-responsive NPH3 family protein (.1) AT5G64330 358 / 6e-114 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) AT5G48800 337 / 2e-107 Phototropic-responsive NPH3 family protein (.1) AT5G67385 303 / 1e-94 Phototropic-responsive NPH3 family protein (.1) AT5G10250 302 / 3e-94 DOT3 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G150500 [exp] 1161 / 0 AT3G44820 826 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 574 / 0 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 571 / 0 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.008G038600 [exp] 466 / 2e-157 AT5G03250 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.010G223600 [exp] 463 / 4e-156 AT5G03250 683 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 457 / 4e-154 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G033900 [exp] 439 / 2e-146 AT5G66560 789 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.005G130700 [exp] 418 / 3e-138 AT5G66560 733 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G112600 [exp] 379 / 4e-123 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019522 [exp] 892 / 0 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 541 / 0 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 537 / 0 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10040409 [exp] 439 / 1e-146 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 436 / 2e-145 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 430 / 2e-143 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023523 [exp] 431 / 4e-143 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10041276 [exp] 428 / 4e-142 AT5G66560 750 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10037432 [exp] 426 / 2e-141 AT5G66560 747 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 404 / 1e-132 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.004G189800.1 pacid=42795193 polypeptide=Potri.004G189800.1.p locus=Potri.004G189800 ID=Potri.004G189800.1.v4.1 annot-version=v4.1 ATGGCCCCTGCAGGGAAAGTTACTGGTTTTCACAAAGAGGGTAGTGACTGGTTCTGCAATGCAGGGTTGCCAAGTGATATCACTGTTGTTGTGGATGATA TAAAGTTCCATCTTCATAAGTTTCCACTGGTGTCAAAGTGTGGGAAGATAGCACGAATATGTGAAGAATCCTCTGAAAAGGCATTCATCGCAGCATTTGA GGAATTCCCTGGTGGCCCAGACACTTTCTTGATTGCAGTAAAGTTTTGCTATGGATTAAGGGTGGAACTGACACCAAGAAACATAGTAATCGTGTATTGT GCAGCAGACTATCTTCAGATGACAGATGAGTACGGAGAAGATAACTTGCTTTCCAAGTCTGAAAATTTCTTCCACAAGAACGTACTTCACAACTGGAAAG ACTGTATATTGGCTCTTCAAAGTTCCAATCCTGTTATTGCAAGGGCTGAAAAGCTCCAGATTATAAGCAAATGTTTGAGTGCTCTATCCATGATGGTATG CACAGATCCTAGTTTGTTTGGATGGCCCATGATGATGTATGGTAGCTTACAGAGCCCTGGTGGAAGCATCCTGTGGAATGGTATAAACACTGGGGCTAGA ATCCAAAGCGTAGAATCTGACTGGTGGTTTGAGGACATATCATACCTTAGTGTAGGTTTGTTTGAAAGATTGATAAATACAATGGAAACCAGAGGCATAA GGCCTGAAATTCTTGTGGGTGCAATTATGTATTATGCCAGGAAGTACCTACCGGGCCTGGGCAGGTGGCAGAGTGGACAAAGTCGGAAAACAAGAACATT TGCCAGTTTTAGCTTGACACCTGCTGTTGTTGATCAAAAGGTTTTGATAGAAACCATTGAAAAACTCATCCCAGAAAAAAAGGGGAAATCCTTTTGCCGT TTTTTATTGGGACTTCTTCGAGTTGCTCTGATACTGGGTGTCAATCAAATGTGCAAGGACTCTTTAGAGAGGAGAGTAGGGATGCAGCTGGAAGTGGCGA CCCTAGATAGTCTTCTTATTCCTGCCTATTCAGATTCTGATACTTTGTACAATGTTGACTGTGTGGAAAGGATCATCCATCATTTCATGGCTTCAGAATC CAGGATTACGTTATTTTCTCCATCATCATTGGACCCAGAAACATCTCCATCATCTGAACCTTTAAGAAAGGTTGCAAAACTGATAGATAACTACATTGCA GAGGTTGCTTCAGACATACATTTGAAACCTAGAAAGATACGATCTCTTGCAGAGGCCCTTCCAGAATCTTCAAGACCATTGCATGACGGGCTATACAGAG CACTGGATATATATTTCAAGGCACACCCTTGGCTATCAGAGAAAGAGAAGGAAGAACTTTGCAACACCATTGACTACCAGAAGCTCTCCATTGATGCCTG TGCCCATGCTTCCCAGAATGCAAGGTTACCTCTTAGAGTTGCTCTTCAAGTGTTGTTCTTTGAGCAGATGCAATTGAGAACTGCTCTTGCTGGCTGTCTA CATGTCATGGACACTGAAAGTGCCCCTGCAGGTCCCATTCCTAGTGATATGTTGGGCCAGATTGTACAGAGGGATGGGTGGAGAACAGTTGTGCAAGTGA ACCAGGTTTTAAAGGTAGATATGGACAATATGAGGTCTAGAGTTGGGGAACTTGAAGAAGAATTTAGTAAAATAAAACAAGAGATGAAGAGAGTGACTAA GTCACATAGCTCTCTTAGTTCCCCTCGCTTGGTTGCCAGGAAGATTGGGTGCAAGCTTGTTCCACGATCTTCAGATGCACAACCTGATACTGTTGATATT ACTGGACCAACACCTAGAGCATCAGTTGAACAAGCACACCGTCCCCACCATTCGAGACACTGGAAGAGTTTCTCTATGTTTTGA
AA sequence Show only first row Show all	>Potri.004G189800.1 pacid=42795193 polypeptide=Potri.004G189800.1.p locus=Potri.004G189800 ID=Potri.004G189800.1.v4.1 annot-version=v4.1 MAPAGKVTGFHKEGSDWFCNAGLPSDITVVVDDIKFHLHKFPLVSKCGKIARICEESSEKAFIAAFEEFPGGPDTFLIAVKFCYGLRVELTPRNIVIVYC AADYLQMTDEYGEDNLLSKSENFFHKNVLHNWKDCILALQSSNPVIARAEKLQIISKCLSALSMMVCTDPSLFGWPMMMYGSLQSPGGSILWNGINTGAR IQSVESDWWFEDISYLSVGLFERLINTMETRGIRPEILVGAIMYYARKYLPGLGRWQSGQSRKTRTFASFSLTPAVVDQKVLIETIEKLIPEKKGKSFCR FLLGLLRVALILGVNQMCKDSLERRVGMQLEVATLDSLLIPAYSDSDTLYNVDCVERIIHHFMASESRITLFSPSSLDPETSPSSEPLRKVAKLIDNYIA EVASDIHLKPRKIRSLAEALPESSRPLHDGLYRALDIYFKAHPWLSEKEKEELCNTIDYQKLSIDACAHASQNARLPLRVALQVLFFEQMQLRTALAGCL HVMDTESAPAGPIPSDMLGQIVQRDGWRTVVQVNQVLKVDMDNMRSRVGELEEEFSKIKQEMKRVTKSHSSLSSPRLVARKIGCKLVPRSSDAQPDTVDI TGPTPRASVEQAHRPHHSRHWKSFSMF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44820			Phototropic-responsive NPH3 fa...		Potri.004G189800 [exp]	0	1
AT4G11450			Protein of unknown function (D...		Potri.003G127500 [exp]	5.00	0.8257
AT1G53860			Remorin family protein (.1)		Potri.001G163000 [exp]	15.87	0.7808
AT1G79910			Regulator of Vps4 activity in ...		Potri.003G054700 [exp]	18.97	0.7737
AT2G25220			Protein kinase superfamily pro...		Potri.001G048500 [exp]	19.51	0.7776
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Potri.008G140500 [exp]	34.81	0.7594
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Potri.002G124800 [exp]	38.78	0.7638
AT3G20260			Protein of unknown function (D...		Potri.008G004400 [exp]	43.26	0.7549
AT3G08490			unknown protein		Potri.009G061300 [exp]	51.33	0.7547
AT1G79910			Regulator of Vps4 activity in ...		Potri.001G181300 [exp]	51.84	0.6860
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Potri.008G046600 [exp]	56.23	0.6927

Compare expression of checked genes

Potri.004G189800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.