Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	AXS1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08200 717 / 0 AXS2 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) AT2G27860 716 / 0 AXS1 UDP-D-apiose/UDP-D-xylose synthase 1 (.1) AT3G53520 115 / 2e-28 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT3G46440 112 / 5e-28 UXS5 UDP-XYL synthase 5 (.1.2) AT2G28760 112 / 6e-28 UXS6 UDP-XYL synthase 6 (.1.2.3) AT2G47650 113 / 2e-27 UXS4 UDP-xylose synthase 4 (.1.2) AT5G59290 111 / 2e-27 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT3G62830 106 / 5e-25 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G53500 62 / 4e-10 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT1G78570 55 / 5e-08 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G150600 [exp] 749 / 0 AT1G08200 736 / 0.0 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) Potri.008G053100 [exp] 117 / 1e-29 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.001G237200 [exp] 117 / 1e-29 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.010G207200 [exp] 115 / 6e-29 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.014G129200 [exp] 109 / 3e-26 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G204400 [exp] 109 / 3e-26 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.016G080500 [exp] 106 / 4e-25 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.006G214000 [exp] 104 / 2e-24 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.001G383500 [exp] 64 / 1e-10 AT1G78570 1190 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020521 [exp] 711 / 0 AT1G08200 731 / 0.0 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) Lus10005370 [exp] 710 / 0 AT1G08200 732 / 0.0 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) Lus10001707 [exp] 118 / 7e-30 AT2G28760 636 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10040847 [exp] 117 / 1e-29 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10005450 [exp] 117 / 2e-29 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10005155 [exp] 117 / 2e-29 AT2G28760 639 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10030368 [exp] 114 / 8e-28 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10003605 [exp] 112 / 3e-27 AT2G47650 693 / 0.0 UDP-xylose synthase 4 (.1.2) Lus10024436 [exp] 101 / 2e-23 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10006510 [exp] 101 / 2e-23 AT3G62830 637 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01073 [poplar] [flax] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family
Representative CDS sequence Show only first row Show all	>Potri.004G189900.1 pacid=42794725 polypeptide=Potri.004G189900.1.p locus=Potri.004G189900 ID=Potri.004G189900.1.v4.1 annot-version=v4.1 ATGGCATCATCAGTGGTGAGGGTTGATCTTGATGGAAAACCAATAAATCCGCTAACAATTTGCATGATCGGTGCTGGTGGTTTCATTGGGTCCCACCTGT GTGAGAAGATCTTGAACGAGACTCAACACAAGATCTTAGCCCTTGATGTTTACAATGACAAGATCAAGCACCTTCTCGAACCGGACAGCCTCCCTTGGGC TGGCCGGATCCAGTTCCACCGTATCAATATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGTCAGATCTGACGATAAATCTGGCTGCGATCTGT ACTCCGGCGGATTATAATACACGTCCTTTGGATACGATTTATAGCAACTTTATCGACGCGTTGCCTGTGGCGAAGTACTGTTCAGAGAATGGGAAGCGTC TGATTCACTTCTCGACTTGTGAAGTGTATGGGAAAACTATTGGGAGTTTTCTTCCTAAAGACAGTCCTCTTCGTCAGGATCCTGCATATTATGTGCTTAA AGAAGATGCCTCTCCCTGCATTTTTGGTTCCATTGAGAAGCAGAGATGGTCTTATGCGTGTGCAAAGCAATTGATTGAGAGGCTGGTTTATGCTGAGGGT GCAGAGAATGGACTTGAGTTCACCATCGTGAGGCCTTTCAACTGGATTGGACCCAGAATGGATTTTATTCCCGGTGTTGATGGCCCAAGTGAGGGCGTTC CCCGGGTTCTTGCTTGCTTTAGCAATGCTCTTCTTCGCCGGGAGCCGCTCAAGCTTGTGGATGGTGGCGAATCCCAGAGAACATTTGTTTATATTAAGGA TGCCATCGAGGCTGTTCTCTTGATGATTGAAAATCCTTCCAGGGCCAATGGTCATATTTTTAACGTTGGCAACCCTAACAATGAAGTCACTGTGAGGCAG CTTGCTGAAATGATGACAGCGGTCTACGCAAATGTAAGTGGAGAACCTGCTCTGGAGGAACCGACAGTTGATGTCAGCTCCAAAGAGTTCTACGGTGAGG GATATGACGATAGTGACAAGAGAATTCCAGACATGACCATAATCAATAGACAACTTGGTTGGAACCCCAAGACGTCTCTGTGGGACTTGCTCGATTCAAC CCTCACTTATCAACACAAGACTTATGCCGAGGCAATCAAGAAGGTCATGTCACAACCCACAACCAGCTGA
AA sequence Show only first row Show all	>Potri.004G189900.1 pacid=42794725 polypeptide=Potri.004G189900.1.p locus=Potri.004G189900 ID=Potri.004G189900.1.v4.1 annot-version=v4.1 MASSVVRVDLDGKPINPLTICMIGAGGFIGSHLCEKILNETQHKILALDVYNDKIKHLLEPDSLPWAGRIQFHRINIKHDSRLEGLIKMSDLTINLAAIC TPADYNTRPLDTIYSNFIDALPVAKYCSENGKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLVYAEG AENGLEFTIVRPFNWIGPRMDFIPGVDGPSEGVPRVLACFSNALLRREPLKLVDGGESQRTFVYIKDAIEAVLLMIENPSRANGHIFNVGNPNNEVTVRQ LAEMMTAVYANVSGEPALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINRQLGWNPKTSLWDLLDSTLTYQHKTYAEAIKKVMSQPTTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08200		AXS2	UDP-D-apiose/UDP-D-xylose synt...		Potri.004G189900 [exp]	0	1	AXS1.2
AT5G38700			unknown protein		Potri.002G198800 [exp]	9.16	0.7927
AT4G18060			SH3 domain-containing protein ...		Potri.001G354700 [exp]	18.38	0.8179
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Potri.001G360800 [exp]	19.41	0.7918
AT1G71360			Galactose-binding protein (.1)		Potri.019G068900 [exp]	22.44	0.7679
AT3G54650		FBL17	RNI-like superfamily protein (...		Potri.002G044800 [exp]	23.49	0.7780
AT5G45750		AtRABA1c	RAB GTPase homolog A1C (.1)		Potri.011G070300 [exp]	26.22	0.8010
AT2G26680			unknown protein		Potri.002G119800 [exp]	27.56	0.7805
AT1G64980			Nucleotide-diphospho-sugar tra...		Potri.011G117500 [exp]	28.87	0.8156
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Potri.018G076500 [exp]	29.93	0.7545
AT3G14880			unknown protein		Potri.007G098800 [exp]	30.74	0.7684

Compare expression of checked genes

Potri.004G189900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.