Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44850 769 / 0 Protein kinase superfamily protein (.1) AT3G53030 755 / 0 SRPK4 ser/arg-rich protein kinase 4 (.1) AT5G22840 750 / 0 Protein kinase superfamily protein (.1) AT2G17530 254 / 5e-80 Protein kinase superfamily protein (.1.2.3) AT4G35500 256 / 1e-79 Protein kinase superfamily protein (.1.2) AT4G24740 109 / 1e-25 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT4G32660 106 / 7e-25 AME3 Protein kinase superfamily protein (.1.2.3) AT3G53570 105 / 4e-24 AME2, AFC1 FUS3-complementing gene 1 (.1.2.3.4) AT5G35980 102 / 1e-22 YAK1 yeast YAK1-related gene 1 (.1.2) AT1G73450 102 / 2e-22 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G151500 [exp] 972 / 0 AT3G44850 735 / 0.0 Protein kinase superfamily protein (.1) Potri.006G117800 [exp] 810 / 0 AT3G53030 740 / 0.0 ser/arg-rich protein kinase 4 (.1) Potri.007G063100 [exp] 482 / 3e-167 AT2G17530 679 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G102100 [exp] 259 / 1e-80 AT2G17530 703 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.006G244400 [exp] 109 / 1e-25 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.012G089700 [exp] 105 / 3e-24 AT4G24740 744 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.015G085700 [exp] 105 / 5e-24 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.016G079900 [exp] 104 / 8e-24 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.006G213400 [exp] 101 / 7e-23 AT3G53570 720 / 0.0 FUS3-complementing gene 1 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005363 [exp] 755 / 0 AT3G44850 681 / 0.0 Protein kinase superfamily protein (.1) Lus10020515 [exp] 746 / 0 AT5G22840 684 / 0.0 Protein kinase superfamily protein (.1) Lus10005364 [exp] 676 / 0 AT3G53030 653 / 0.0 ser/arg-rich protein kinase 4 (.1) Lus10020516 [exp] 670 / 0 AT3G53030 647 / 0.0 ser/arg-rich protein kinase 4 (.1) Lus10035984 [exp] 262 / 2e-81 AT4G35500 694 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016690 [exp] 261 / 2e-81 AT4G35500 683 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019458 [exp] 107 / 7e-25 AT4G24740 729 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10043309 [exp] 106 / 2e-24 AT4G24740 730 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10025301 [exp] 105 / 3e-24 AT3G53570 726 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10024431 [exp] 105 / 6e-24 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.004G190400.1 pacid=42793785 polypeptide=Potri.004G190400.1.p locus=Potri.004G190400 ID=Potri.004G190400.1.v4.1 annot-version=v4.1 ATGGCAGAGGATAGGAATGGGGATCGAAGCGAAGAGAGTGATTACACTTCGGAAGATGAGGGAACGGAGGATTATAGGAGAGGAGGGTATCATGCTGTGA GAATTGGTGATACATTCAAGAATGGGAGGTATGTGGTGCAAAGCAAGCTTGGCTGGGGTCATTTCTCTACTGTTTGGCTCGCTTGGGACATTCAAGGATC GCGTTACGTAGCTTTGAAAGTTCAAAAGAGTGCTCAGCACTACACGGAGGCAGCGATGGATGAGATAAAGATCCTCAAACAGATTGCTGAGGGAGATCCT GATGATAAAAAGTGTGTCGTCAAGCTTTTGGATCATTTTAAGCATTCAGGGCCTAATGGACAGCACGTATGTATGGTTTTTGAGTACTTAGGAGATAACC TTTTGAGCCTTATTAAGTATAGTGGTTACCGCGGGGTGCCTCTGCACATGGTCAAAGAGATATGCTTTCATATGCTGGTGGGTTTGGATTACTTGCATCG CCAGCTTTCAATTATACACACCGATTTGAAGCCAGAGAATGTCCTGCTTTTCTCAATGATTGATCCATCAAAAGATCCGAGAAAATCAGGTGCTCCTCTT ATCCTTCCAACCAACAAGAACAAAATTGTGGCTGAATCTAGTTCTTCGAAAGAAATTAAGAGTTTGAATGGGGATTTGACAAGGAATCAAAAGAAGAAAA TCCGAAAGAAGGCTAAGAAGGCAGCTCAGAGTTGTACACAGAAAGAAGCCTCTTTGGAAAATGATGCTGATCCCAAACCATCTAGTCCTGAAGATTCTAA TGCTGATGTGAAATCAAATGAAGATTCTTTTGAGGAACAATCAAATGGTTCTGTGATTAAGGATGATTCAGCAAACAGTGATGGACAGAAGGATGCTTGT CAAGCAAAACGCAGTAGAAGGGGGAGTCGCTCCACGAGGCAAAATCTCTTGGCAGCTGCTGATCTAAAGTGCAAATTGGTCGATTTTGGAAATGCTTGTT GGACGTACAAACAGTTTACAAGTGATATTCAGACAAGACAGTATAGGTGTCCAGAGGTTCTTCTTGGATCTAAATACTCTACTCCAGCAGATCTATGGTC CTTTGCTTGCATTTGTTTTGAGCTTGTCACTGGTGATGTCCTTTTTGATCCTCACAGTGGTGACAACTATGATAGAGATGAGGATCACTTGGCATTGATG ATGGAGCTTCTAGGCATGATGCCGCGCAAGATTGCATTAGGTGGTCGCTATTCTCGGGATTTCTTCAATAGATATGGAGATTTAAGGCATATTCGTAGGT TGCGTTTCTGGCCTCTTACTAAGGTGCTTATGGAGAAGTATGATTTCAGTGAGCAAGATGCTAATGACATGACTGACTTCCTTGTTCCAATACTTGATTT TGTGCCTGAAAAGAGACCGACAGCAGCTCAATGCCTTAATCATCCATGGATCACTGCTGGTCCTCGTCTGCTTGAACCTTCCATGCCAAGTGTTAAGCAC GAGGCCAAAAATAGGAATACATCTGAAATCAAAGAGAAGGCGGAGAGGGAGGCTATGGAAGCTGGAGTAGGAAATATAGTTATTGATGGCGCTTCAAAAA AATCCAAAGAATCACAACCTATGGAAAACCCTTCTAAAGTGACATGA
AA sequence Show only first row Show all	>Potri.004G190400.1 pacid=42793785 polypeptide=Potri.004G190400.1.p locus=Potri.004G190400 ID=Potri.004G190400.1.v4.1 annot-version=v4.1 MAEDRNGDRSEESDYTSEDEGTEDYRRGGYHAVRIGDTFKNGRYVVQSKLGWGHFSTVWLAWDIQGSRYVALKVQKSAQHYTEAAMDEIKILKQIAEGDP DDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLSLIKYSGYRGVPLHMVKEICFHMLVGLDYLHRQLSIIHTDLKPENVLLFSMIDPSKDPRKSGAPL ILPTNKNKIVAESSSSKEIKSLNGDLTRNQKKKIRKKAKKAAQSCTQKEASLENDADPKPSSPEDSNADVKSNEDSFEEQSNGSVIKDDSANSDGQKDAC QAKRSRRGSRSTRQNLLAAADLKCKLVDFGNACWTYKQFTSDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELVTGDVLFDPHSGDNYDRDEDHLALM MELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLTKVLMEKYDFSEQDANDMTDFLVPILDFVPEKRPTAAQCLNHPWITAGPRLLEPSMPSVKH EAKNRNTSEIKEKAEREAMEAGVGNIVIDGASKKSKESQPMENPSKVT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44850			Protein kinase superfamily pro...		Potri.004G190400 [exp]	0	1
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Potri.011G024700 [exp]	4.47	0.6932	ATPC1.2
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Potri.013G077500 [exp]	5.47	0.6215
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Potri.017G009900 [exp]	14.49	0.6471
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Potri.003G079700 [exp]	21.30	0.6550
AT3G01600	NAC	ANAC044	NAC domain containing protein ...		Potri.001G343800 [exp]	21.44	0.6247
AT5G63700			zinc ion binding;DNA binding (...		Potri.001G305900 [exp]	23.91	0.6124
					Potri.009G042350 [exp]	34.35	0.5794
AT1G55200			Protein kinase protein with ad...		Potri.002G130300 [exp]	42.74	0.6183
AT1G55360			Protein of Unknown Function (D...		Potri.001G003800 [exp]	50.73	0.6020
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Potri.014G174700 [exp]	54.41	0.5785

Compare expression of checked genes

Potri.004G190400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.