Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21990 694 / 0 OEP61, TPR7 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G21640 79 / 2e-15 FKBP42, UCU2, TWD1, ATFKBP42 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G25230 75 / 6e-14 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT5G48570 75 / 6e-14 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G58450 67 / 6e-13 TPR6 tetratricopeptide repeat 6, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30480 67 / 5e-12 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT1G56440 59 / 4e-09 TPR5 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G42580 51 / 2e-06 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT3G58620 47 / 5e-05 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT3G17880 45 / 8e-05 ATHIP2, ATTDX HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G151700 [exp] 927 / 0 AT5G21990 700 / 0.0 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G156250 [exp] 114 / 4e-30 AT5G21990 73 / 2e-16 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G059200 [exp] 77 / 4e-15 AT3G21640 548 / 0.0 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G264400 [exp] 77 / 6e-15 AT3G21640 556 / 0.0 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G248300 [exp] 76 / 3e-14 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.014G149400 [exp] 74 / 1e-13 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.006G178900 [exp] 68 / 3e-12 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.018G100700 [exp] 65 / 3e-11 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.006G033400 [exp] 63 / 3e-10 AT5G48570 596 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036162 [exp] 712 / 0 AT5G64220 818 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10019379 [exp] 698 / 0 AT5G21990 658 / 0.0 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029505 [exp] 85 / 9e-18 AT3G21640 409 / 5e-144 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10039604 [exp] 83 / 7e-17 AT3G21640 327 / 3e-110 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10025888 [exp] 80 / 2e-15 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10038216 [exp] 79 / 3e-15 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10002338 [exp] 74 / 3e-13 AT3G25230 874 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10003171 [exp] 71 / 2e-12 AT3G25230 871 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10035117 [exp] 68 / 2e-12 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031983 [exp] 67 / 2e-11 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.004G190600.1 pacid=42794609 polypeptide=Potri.004G190600.1.p locus=Potri.004G190600 ID=Potri.004G190600.1.v4.1 annot-version=v4.1 ATGTTTAATGGAATGATGGATCCCGAGCTGATAAAAATTGCTCAGGAACAAATGAGTCGAATGACGCCCGCGGATTTCGCCAGGATCCAACAACAGGTAA TGTCTAATCCTGAGTTGGTGAGAATGGCATCTGAAAGTATGAAGAATATGAAGCCTGATGACTTGAAACAGGCAGCAGAACAGTTGAAGCACACGCGCCC TGAAGAGATGGCGGAGATTGGTGAGAAAATGATGAATGCATCACCTGAAGAGATTGCTGCTATGCGTGCTCGAGCTGATGCACAGACAACATATGAAATA AACGTGGCGCAGATGTTGAAGAAACAGGGTAATGAGCTGCATAGCCAGGGAAAGTTCAATGATGCTTTGCAGAAATATTTGCTTGCAAAGCAAAATCTAA AAGGAATTACATCCTCCAAAGGCAGAACACTTTGGTTAGCATGCTCTCTTAATTTAATGTCTTGCTACTTGAAAACAAAGCAGTACAATGAATGCATAAA AGAGGGCTCAGAGGTTTTGGGATATGATGCCAATAATGTTAAAGCTCTTTATAGAAGGGGTCAAGCTTACAGGGAACTAGGACAACTGGAAGATGCTGTA TCTGATCTTAGAAAAGCACATGAAGTTTCCCCGGATGAGGAAACTATTGCAGACATTCTAAGGAGTGCTGAGGAAACATTGGCTCGAGAAGGTGGCCATC ATGCACCAAGGGGAGTGATAATTGAAGAAATAACTGATGAAGCTGAGACTGTCTCCTCTGAAAACCTCAAGAGTACATCAACAGAGTATCAAGTGAAGCA ACCACGGGAAAGTGCTGATATATCTAAAAGTGGAAAGGGAGGTCGCAATGGGAGTTCAGCAACTAATTCAGAGGCCTTGGAGGCTTTGAAAGATGACCCT GAAGCTATGAGGTCATTCCAAAATTTCATATCTAATGCTGATCCTGAAACTTTGGCTGCTTTAAATGGGGCAAAAGCTGGAGAGGTGTCTCCTGACATGG TTAAGGCTGCCTCGAATATGATTGGCAAGATGTCACCCGAAGAGCTTCAAAGAATGCTTCAAATGGCTTCCTCATTCCAAGGGGCGACTCCTTTTACTGC AGGTGGATCTTCAGATAGCAGTTTTAATGGCTTCAAATCTGGTGTGGTTCCTCCAAATGTGACACCAGACATGCTCAAAACAGCAAGTGATACGATGAAT AAGATGTCACCAGAAGAGCTTCAGAAAATGTTTGAAATGGCATCTTCTTTAAGAGGAAATAGCTCAGTTCCAGCTGTTGCTTCAGCTTTAAACACTGACA GATCAAGTTTGGGTGCTAGGTCAAAACCAACAGAAACTCGAGAAAAATTTGCAGTTAATGGTAATAATGGCATCAGTGAAACTAGTTCCTCGCGTGATTT CTTTTCAAGTTCGAGAAATGCTCCTCCATCAAGCTTTCCTGCCTCAACTTCTGATATGCAAGAACAGATGAGAAACCAAATGAAAGATCCTGCTATGCAG CAGATGTTCACGTCAATGATGAAGAATATGAGCCCAGAGATGATGGCTAACATGAGTGAGCAGTTTGGAATAAAACTTTCTCAAGAAGATGCAGCTAAAG CTCAACAGGCCATGGCATCTTTATCACCAGAGGACTTGGATAAAATGATGCGATGGGCTGATAGGATCCAAAGAGGAGCTGAAGGTGCAAAGAAGGCAAA GAACTGGTTACTGGGAAGACCTGGTATGATCCTTGCCATTTGCATGTTGATCTTAGCCATCATCCTCCACCGGCTAGGCTTCATCGGGAGGTAG
AA sequence Show only first row Show all	>Potri.004G190600.1 pacid=42794609 polypeptide=Potri.004G190600.1.p locus=Potri.004G190600 ID=Potri.004G190600.1.v4.1 annot-version=v4.1 MFNGMMDPELIKIAQEQMSRMTPADFARIQQQVMSNPELVRMASESMKNMKPDDLKQAAEQLKHTRPEEMAEIGEKMMNASPEEIAAMRARADAQTTYEI NVAQMLKKQGNELHSQGKFNDALQKYLLAKQNLKGITSSKGRTLWLACSLNLMSCYLKTKQYNECIKEGSEVLGYDANNVKALYRRGQAYRELGQLEDAV SDLRKAHEVSPDEETIADILRSAEETLAREGGHHAPRGVIIEEITDEAETVSSENLKSTSTEYQVKQPRESADISKSGKGGRNGSSATNSEALEALKDDP EAMRSFQNFISNADPETLAALNGAKAGEVSPDMVKAASNMIGKMSPEELQRMLQMASSFQGATPFTAGGSSDSSFNGFKSGVVPPNVTPDMLKTASDTMN KMSPEELQKMFEMASSLRGNSSVPAVASALNTDRSSLGARSKPTETREKFAVNGNNGISETSSSRDFFSSSRNAPPSSFPASTSDMQEQMRNQMKDPAMQ QMFTSMMKNMSPEMMANMSEQFGIKLSQEDAAKAQQAMASLSPEDLDKMMRWADRIQRGAEGAKKAKNWLLGRPGMILAICMLILAIILHRLGFIGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G21990		OEP61, TPR7	tetratricopeptide repeat 7, ou...		Potri.004G190600 [exp]	0	1
AT2G32150			Haloacid dehalogenase-like hyd...		Potri.008G151700 [exp]	14.83	0.6937	NOD33.2
AT1G21780			BTB/POZ domain-containing prot...		Potri.005G178400 [exp]	20.00	0.6192
					Potri.008G105401 [exp]	23.19	0.6739
AT1G49120	AP2_ERF	CRF9	cytokinin response factor 9, I...		Potri.015G054500 [exp]	25.09	0.6361
AT1G05790			lipase class 3 family protein ...		Potri.014G150800 [exp]	33.36	0.6217
AT4G12230			alpha/beta-Hydrolases superfam...		Potri.001G118000 [exp]	35.70	0.6084
AT2G23090			Uncharacterised protein family...		Potri.001G296600 [exp]	39.03	0.6357
AT4G37300		MEE59	maternal effect embryo arrest ...		Potri.007G049800 [exp]	45.90	0.5709
AT1G28510			Optic atrophy 3 protein (OPA3)...		Potri.011G059800 [exp]	51.24	0.5933
AT4G00525			unknown protein		Potri.014G083100 [exp]	61.99	0.5971

Compare expression of checked genes

Potri.004G190600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.