Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36300 367 / 8e-130 Integral membrane Yip1 family protein (.1) AT3G52760 359 / 1e-126 Integral membrane Yip1 family protein (.1) AT4G30260 40 / 0.0008 Integral membrane Yip1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G152600 [exp] 444 / 2e-160 AT2G36300 365 / 6e-129 Integral membrane Yip1 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021374 [exp] 403 / 7e-144 AT2G36300 380 / 5e-135 Integral membrane Yip1 family protein (.1) Lus10022723 [exp] 365 / 2e-129 AT3G52760 346 / 8e-122 Integral membrane Yip1 family protein (.1) Lus10017054 [exp] 321 / 8e-111 AT3G52760 315 / 3e-108 Integral membrane Yip1 family protein (.1) Lus10014191 [exp] 79 / 1e-16 AT3G48410 412 / 3e-143 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0112 [poplar] [flax] Yip1 PF04893 [poplar] [flax] Yip1 Yip1 domain
Representative CDS sequence Show only first row Show all	>Potri.004G190800.1 pacid=42795818 polypeptide=Potri.004G190800.1.p locus=Potri.004G190800 ID=Potri.004G190800.1.v4.1 annot-version=v4.1 ATGACGAAGGAATTCGCTGTTCCACCAGTAGTTTTCCCATCCGTCGGGAACCCGACGGTCGCCACTGGCGGAAACATCCAGCAACGCCGAGTACCAATAG CTCCATTCCAACCTCCACGTCCATCAAACTCCGGAATCCCTTTCATGTCCTTCGATATCGGTTCCGCTGCCGCGACCACCGTCGGTCCAATCGGCGGAGG AACCGGTCCTATCGGTGGTGTAGCCAACTTCGACGACGAAGAACCACTCCTTGACGAACTCGGGATCCACCCAGACCAAATCTGGAAGAAAACGAAATCT ATTTTAAATCCATTCCGGGTCAACCCTACATTCCACAAGGATTCGGATCTATCCGGCCCAATATTTTTGTACCTATCGTTCTGTTTGTTTCAATTACTCG CCGGGAAAATCCAATTTGGCGTGATATTGGGGTGGATTGTCGTTTCCTCGATTTTCTTGTACGTTGTGTTCAATATGTTGGCTGGTAGACATGGGAATTT AAATCTGCACACATGTACGAGTGTGATTGGTTACTGTTTGTTGCCGGTGGTGATTTTATCGGCGGTTTCGCTGTTCGTGCCGCAAAATGGGGCTCTTAGG TTTGGGATTGCTGGGGTTTTCGTGATTTGGGCTACGAGGGCTTGCACGAATTTGATGGTCGCTGTTGCTGATGGTGGAGAGGAGCATCGTGGATTGATTG CGTACGCCTGTTTCTTGATTTACACTCTGTTTTCACTGCTTGTTATATTTTAG
AA sequence Show only first row Show all	>Potri.004G190800.1 pacid=42795818 polypeptide=Potri.004G190800.1.p locus=Potri.004G190800 ID=Potri.004G190800.1.v4.1 annot-version=v4.1 MTKEFAVPPVVFPSVGNPTVATGGNIQQRRVPIAPFQPPRPSNSGIPFMSFDIGSAAATTVGPIGGGTGPIGGVANFDDEEPLLDELGIHPDQIWKKTKS ILNPFRVNPTFHKDSDLSGPIFLYLSFCLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRHGNLNLHTCTSVIGYCLLPVVILSAVSLFVPQNGALR FGIAGVFVIWATRACTNLMVAVADGGEEHRGLIAYACFLIYTLFSLLVIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36300			Integral membrane Yip1 family ...		Potri.004G190800 [exp]	0	1
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Potri.010G039700 [exp]	7.74	0.8314	Pt-PP2.1
AT1G71780			unknown protein		Potri.002G062300 [exp]	10.53	0.8494
AT3G22950		ATARFC1	ADP-ribosylation factor C1 (.1...		Potri.015G142600 [exp]	11.61	0.8142
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Potri.002G034200 [exp]	19.74	0.7879	Pt-RER1.5
AT1G12440			A20/AN1-like zinc finger famil...		Potri.003G117100 [exp]	21.54	0.7963
AT3G54950		pPLAIIIbeta, PL...	patatin-related phospholipase ...		Potri.012G123900 [exp]	22.75	0.8267
AT1G02180			ferredoxin-related (.1)		Potri.006G220700 [exp]	27.22	0.8305
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Potri.001G028000 [exp]	29.94	0.8176	Pt-NQR.2
AT1G01780	LIM	PLIM2b	PLIM2b, GATA type zinc finger ...		Potri.002G157300 [exp]	30.59	0.8232
AT1G24480			S-adenosyl-L-methionine-depend...		Potri.010G052100 [exp]	34.89	0.8274

Compare expression of checked genes

Potri.004G190800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.