Plant FIBer expression Database

Potri.004G190900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G17920 1401 / 0 ATCIMS, ATMETS, ATMS1 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2)
AT3G03780 1377 / 0 ATMS2 methionine synthase 2 (.1.2.3)
AT5G20980 1304 / 0 ATMS3 methionine synthase 3 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G152800
[exp]
1489 / 0 AT5G17920 1394 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2)
Potri.019G038268
[exp]
1415 / 0 AT5G17920 1454 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2)
Potri.013G061800
[exp]
1411 / 0 AT5G17920 1440 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008422
[exp]
1394 / 0 AT5G17920 1389 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2)
Lus10003363
[exp]
1390 / 0 AT5G17920 1384 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2)
Lus10020273
[exp]
1389 / 0 AT5G17920 1434 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2)
Lus10002620
[exp]
1387 / 0 AT5G17920 1430 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0160 Methionine_synt PF01717 Meth_synt_2 Cobalamin-independent synthase, Catalytic domain
CL0160 Methionine_synt PF08267 Meth_synt_1 Cobalamin-independent synthase, N-terminal domain
Representative CDS sequence
>Potri.004G190900.3 pacid=42796013 polypeptide=Potri.004G190900.3.p locus=Potri.004G190900 ID=Potri.004G190900.3.v4.1 annot-version=v4.1
ATGGCTTCCCACATCGTTGGTTACCCTCGCATGGGCCCCAAGAGAGAACTCAAGTTTGCTTTGGAATCTTTCTGGGATGGCAAGAGCAGTGCCGAAGATT
TACAGAAGGTGGCAGCTGATCTCAGGTCATCCATCTGGAAGCAGATGTCTGATGCTGGAATCAAGTTTATTCCCAGCAACACTTTTTCATGCTATGATCA
GGTGTTGGACACTACAGCCATGCTTGGTGCTGTTCCTCCAAGATATGGATGGAATGGTGGTGAGATTGGATTTGATGTCTATTTTTCCATGGCTAGAGGT
AATGCCTCAGTCCCGGCCATGGAAATGACCAAGTGGTTTGATACCAACTACCATTACATTGTCCCTGAATTGGGACCAGAAGTTAACTTCTCCTACGCAT
CTCACAAGGCTGTCAACGAGTACAAGGAGGCCAAGGCTCTTGGAGTTGATACAGTGCCCGTCCTCGTCGGTCCTGTTTCATACTTGTTGCTATCAAAACC
AGCAAAGGGTGTGGAGAAATCCTTTTCTCTCCTCTCCCTAATTGACAAGATTCTTCCTGTCTACCAGGAAGTTCTGGCTGAACTAAAGGCAGCAGGTGCA
AGCTGGATTCAGTTTGATGAGCCGAAGCTTGTGATGGATCTTGGAGCTCATGAATTGCAAGCATTTACCCATGCCTACTCTGCACTTGAGGCATCTTTAT
CTGGTTTGAATGTTCTGGTTGAGACATATTTTGCTGATGTTCCAGTTGAAGCATACAAAACACTCACTTCTTTGAAGAGTGTTACTGGATTTGGGTTTGA
CCTGGTTCGGGGAACAAAGACCCTAGAATTGATTAAGGGTGGATTCCCTTCTGGAAAATACCTCTTTGCTGGAGTGGTTGATGGAAGGAACATCTGGGCT
AACAATCTTGGTTCTTCCCTCGATACACTAAAAGCTCTCGAGGGCATTGTTGGCAAAGACAAGCTTGTAGTATCCACTTCCTGCTCTCTTCTGCACACTG
CCGTTGATCTAGTTAACGAGCCTAAGTTGGACAAAGAGATCAAGTCATGGCTTGCATTTGCAGCACAGAAAGTAGTTGAAGTAAACGCCTTGGCTAAGGC
ACTTGCTGGACAGCAGGATGAGGCATTCTTTTCTGCAAATGCAGCAGCTCAGGCTTCAAGAAAATCCTCACCAAGGGTGACAAATGAGGCTGTTCAAAAG
GCTGCCGTTGCTTTGAAGGGTTCTGACCACCGCCGTGCCACCAACGTTAGTGCTAGGCTGGATGCTCAGCAGAAGAAGTTGAACCTTCCTATTCTTCCTA
CCACAACAATTGGATCATTCCCTCAGACCATGGACCTTAGAAGAGTGCGCCGCGAATACAAGGCTAAGAAGATCTCAGAGCAAAATTATGTTGAGGCCAT
CAAGGAGGAAATTAACAAGGTTGTCAAAATCCAGGAAGAGCTTGACATTGATGTTTTAGTGCATGGTGAACCAGAAAGGAACGACATGGTTGAGTACTTT
GGTGAGCAATTGTCTGGTTTTGCCTTCACCGCTAATGGGTGGGTCCAATCTTATGGTTCTCGTTGTGTCAAGCCTCCTATCATCTATGGTGATGTGAGCC
GCCCCAAGGCCATGACTGTATTCTGGTCTTCAATGGCTCAAAGTATGACTAAGCGACCCATGAAGGGAATGCTTACTGGTCCAGTTACCATTTTAAACTG
GTCCTTTGTCAGAAACGACCAGCCCAGATTTGAGACCTGCTATCAAATAGCTTTGGCCATCAAGGATGAGGTTGAGGATCTTGAGAAAGCTGGAATCACT
GTCATCCAGATTGACGAGGCTGCTTTGAGAGAAGGCTTGCCCCTAAGGAAGTCTGAGCATGCTTTCTATTTGAACTGGGCTGTTCACTCTTTCAGGATCA
CTAATTGTGGAGTCGAAGACACCACTCAGATCCACACCCACATGTGCTACTCAAACTTCAATGACATCATCCACTCAATCATTGACATGGATGCTGATGT
GATCACTATAGAGAACTCCAGATCAGATGAGAAGCTTCTGTCAGTCTTCCGTGAGGGCGTGAAATATGGTGCAGGCATTGGGCCTGGTGTTTATGACATT
CACTCTCCTAGGATCCCCTCAGAAGAAGAAATCGCAGACCGCATTGAGAAGATGCTTGCTGTCCTTGAAAGCAACATCCTTTGGGTCAACCCTGATTGTG
GTTTGAAGACCCGCAAATATGCTGAAGTCAAACCTGCCCTCAGCAACATGGTCGCAGCTGCCAAGCATCTTCGCACCAAGCTCGGAAGTGCCCAGTGA
AA sequence
>Potri.004G190900.3 pacid=42796013 polypeptide=Potri.004G190900.3.p locus=Potri.004G190900 ID=Potri.004G190900.3.v4.1 annot-version=v4.1
MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVAADLRSSIWKQMSDAGIKFIPSNTFSCYDQVLDTTAMLGAVPPRYGWNGGEIGFDVYFSMARG
NASVPAMEMTKWFDTNYHYIVPELGPEVNFSYASHKAVNEYKEAKALGVDTVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKILPVYQEVLAELKAAGA
SWIQFDEPKLVMDLGAHELQAFTHAYSALEASLSGLNVLVETYFADVPVEAYKTLTSLKSVTGFGFDLVRGTKTLELIKGGFPSGKYLFAGVVDGRNIWA
NNLGSSLDTLKALEGIVGKDKLVVSTSCSLLHTAVDLVNEPKLDKEIKSWLAFAAQKVVEVNALAKALAGQQDEAFFSANAAAQASRKSSPRVTNEAVQK
AAVALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTMDLRRVRREYKAKKISEQNYVEAIKEEINKVVKIQEELDIDVLVHGEPERNDMVEYF
GEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGIT
VIQIDEAALREGLPLRKSEHAFYLNWAVHSFRITNCGVEDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDI
HSPRIPSEEEIADRIEKMLAVLESNILWVNPDCGLKTRKYAEVKPALSNMVAAAKHLRTKLGSAQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G17920 ATCIMS, ATMETS,... methionine synthesis 1, COBALA... Potri.004G190900
[exp]
0 1
AT1G12000 Phosphofructokinase family pro... Potri.011G015900
[exp]
2.82 0.9545
AT3G43190 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE S... Potri.006G136700
[exp]
4.24 0.9473 Pt-SUS1.1
AT1G71900 Protein of unknown function (D... Potri.003G009700
[exp]
4.89 0.9367
AT3G59480 pfkB-like carbohydrate kinase ... Potri.017G029000
[exp]
5.29 0.9429
AT5G23860 TUB8, b-TUB tubulin beta 8 (.1.2) Potri.001G106100
[exp]
5.74 0.9073
AT2G22250 ATAAT, AAT, MEE... MATERNAL EFFECT EMBRYO ARREST ... Potri.005G079200
[exp]
7.00 0.9331
AT1G12000 Phosphofructokinase family pro... Potri.006G281900
[exp]
7.14 0.9429
AT3G12150 unknown protein Potri.016G049700
[exp]
10.00 0.8940
AT2G36880 MAT3 methionine adenosyltransferase... Potri.006G123200
[exp]
12.40 0.9210 AdoMet6
AT2G35120 Single hybrid motif superfamil... Potri.015G122500
[exp]
13.03 0.9301

Potri.004G190900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.