Plant FIBer expression Database

Pt-AAO3.3,AAO2 (Potri.004G191300) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-AAO3.3,AAO2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G27150 1678 / 0 AtAAO3, At-AO3, AOdelta, AAO3 Arabidopsis thaliana aldehyde oxidase 3, Aldehyde oxidase delta, abscisic aldehyde oxidase 3 (.1.2)
AT5G20960 1658 / 0 AT-AO1, AOalpha, ATAO1, ATAO, AAO1 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2)
AT3G43600 1654 / 0 AtAO3, atAO-2, AOgamma, AO3, AAO2 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1)
AT1G04580 1650 / 0 ATAO-4, ATAO2, AAO4 ALDEHYDE OXIDASE 2, arabdopsis thaliana aldehyde oxidase 4, aldehyde oxidase 4 (.1)
AT4G34890 529 / 4e-164 ATXDH1 xanthine dehydrogenase 1 (.1)
AT4G34900 510 / 4e-157 ATXDH2 A. THALIANA XANTHINE DEHYDROGENASE 2, xanthine dehydrogenase 2 (.1)
AT1G02590 80 / 7e-18 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G153600
[exp]
2093 / 0 AT3G43600 1741 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1)
Potri.009G054600
[exp]
539 / 1e-167 AT4G34890 2077 / 0.0 xanthine dehydrogenase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008429
[exp]
1816 / 0 AT3G43600 1652 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1)
Lus10013393
[exp]
1813 / 0 AT3G43600 1657 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1)
Lus10019386
[exp]
1724 / 0 AT3G43600 1635 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1)
Lus10040474
[exp]
1605 / 0 AT3G43600 1555 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1)
Lus10011279
[exp]
1375 / 0 AT5G20960 1315 / 0.0 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2)
Lus10034306
[exp]
516 / 3e-159 AT4G34890 2127 / 0.0 xanthine dehydrogenase 1 (.1)
Lus10023586
[exp]
197 / 9e-58 AT3G43600 209 / 5e-63 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0486 Fer2 PF00111 Fer2 2Fe-2S iron-sulfur cluster binding domain
CL0077 FAD_PCMH PF00941 FAD_binding_5 FAD binding domain in molybdopterin dehydrogenase
CL0077 PF01315 Ald_Xan_dh_C Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CL0486 Fer2 PF01799 Fer2_2 [2Fe-2S] binding domain
CL0486 PF02738 Ald_Xan_dh_C2 Molybdopterin-binding domain of aldehyde dehydrogenase
CL0233 SufE_NifU PF03450 CO_deh_flav_C CO dehydrogenase flavoprotein C-terminal domain
Representative CDS sequence
>Potri.004G191300.1 pacid=42796296 polypeptide=Potri.004G191300.1.p locus=Potri.004G191300 ID=Potri.004G191300.1.v4.1 annot-version=v4.1
ATGCGCTCGCTGTCTTTTATGTGTCTACCTCACGAACTGACGCAGACACAAAAAACACAGTCTCAAAAAATGGAAGAGGAGCAGATAGAAAGAGAAACGA
AAAGTCTGGTTTTTGCTGTTAATGGACAAAGGTTTGAGCTTTCAAGTGTTGACCCTTCAATGACTTTGCTTGAATTCTTGCGTACACAGACCCCTTTCAA
GGGTGTCAAGCTTGGTTGCGGTGAAGGTGGTTGTGGTGCTTGTATTGTTCTACTCTCCAAGTATGATCCTGTGATCGATCAAGTTGAAGATATTACAGTA
AGCTCATGTCTGACACTGCTTTGCAGTGTAAATGGATGCGCGATTACAACGACTGAAGGCCTTGGGAATAGCAAAGATGGGTTCCACTCAATTCACCAAA
GGTTTGCTGGCTTCCATTCTTCTCAATGTGGCTTTTGTACTCCTGGAATGTGCATTTCACTCTTTGGGGCCCTGGTTAATGCTGAAAAGACTGATAGGCC
GAAACCCTCTCCAGGATTCTCCAAGTTGACAGCTGTTGAAGCTGAAAAGGCTATCGCAGGAAACCTTTGTCGCTGTACCGGGTATCGATCCATTGCAGAT
GCATGCAAAAGTTTTGCAGCTGATGTTGATATGGAGGATTTGGGATTAAATTGTTTCTGGAAGAAGGGAGAAAGTCCAGATGTAAAGATAAGTAGGTTAC
CTTCATATGACCATAATAACGAGATTTGTACTTTCCCTGAATTTCTTAAATGTGAAATCAAATCTTCCTTTCTTTTGGATTCTCAAAAGTCCTCTTGGTA
CAATCCTGTCAGTGTTAAGGAGCTCCAGAGCCTATTAAAAGCCATTAAAGGCAACAACGGGGCCAGGATCAAACTAGTGGCTGGTAACACAGGTATGGGT
TACTATAAGGATCTACAACACTACGACAATTACATTAATCTCTGCTATGTTCCTGAGCTTTCAATTATTGGGAAAGATCATACAGGGATTGAAATTGGGG
CAACTGTTACTATTTCTAAAGCCATCAAAGCTTTGAAGACAGAGAGTAATGGCGAGTTTCTATCAGAAAGTGAGATGGTGTTCAAAAAAATCGCAGTCCA
AATGGAAAAAATAGCCACTCAATTTGTTCGAAATACAGGTAGTGTGGGGGGGAATTTAATGATGGCACAGAAGAATTGTTTTCCTTCAGATATTGCAACG
ATACTTCTTGCAGCTGGTTCATTTGTGAATATAATAACTGATACCATGCATGAAAAGCTTTCCTTGGAGGATTTTCTGGAAAGGCCTCCACTGGATTCAG
AAAGTATACTTACAAGTGTTAAAATCCCAAAATGGGAACCAATTAAGAATGATTCTTCTGAAAAGGATTGCAAGATGCTCTTTGAAACCTATCGAGCTGC
ACCCCGACCTCTTGGGAATGCCTTGCCCTATTTAAATGCTGCTTTTTTGGCTGAAGTTTGTCGCTGGAAATCTTCCGGGGCAATTACTCTAAACAAATGC
ATGTTGGCTTTTGGTGCCTATGGAACCAGACATTCAATTAGAGCAAGGGAAGTTGAGGAATTTTTAACAGGAAAAAAATTAACTCTAGATGTTCTGTATG
AGAGTATTAAATTAGTTGGAGCCTCTGTGGTACCTGAAGATGGCACAACAAGCTCTGCGTATAGGTCAAGCCTGGCTGTTGGTTTTTTATTTGACTTTCT
TGGTCCCTTAATAGACAATGTTGCTAAAATTTCTAACCATTGGTTGGATAACTATGGTAGTGCAGCAATATTCACTGTTGACGAAGTAAAACAGAAACAC
GACCAGCTTGATCATGTTAAAGTCCCAACTTTGCTGTCATTATCAAAACACGTGTTTGAAGTAACCAAGGAGTATCATCCTGTTGGTGAGCCAGTGAAAA
AATCCGGAGCTGCCCTTCAAGCTTCTGGTGAGGCTATTTTTGTGGATGACATTCCCTCTCCGATGAATTGTCTATATGGAGCATTCATTTATAGTACAAA
GCCTTTTGCTAAGGTCAAAAGTATAAAATTCAAGTCTAAATCACTACCATTTGGGGTTGCTGCACTTATCTGTTTCAAAGATATTCCGAAAGATGGGGAG
AACATAGGTTCTAAATCCATTTTTGGTGCCGAACCTTTGTTTGCTGATGAGATGACTCGGTATGCTGGAGAGCGTATTGCTTTAGTGGTTGCAGATACAC
AGAAACATGCAGATGTGGCATCAAACCTAGTCGTGGTAGATTATGACATGGAAAATCTAGAACCACCTATTTTAACACTGGAAGAAGCTGTTAAGAGATC
TAGCTTTTTTGAGGTCCCTCCTTTCTTCTACCCTAAAGAAGTTGGAGATGCATCAAAAGGAATGGCCGAAGCTGATCATAAGATTCTCTCTGCTAAGATG
AAACTTGGATCACAATATTATTTCTATATGGAGAATCAGAGTGCTCTTGCTTTGCCTGATGAAGACAACTGCTTGGTGGTTTACAGTTCCAGTCAATGCC
CTGAGTTTTCACATTCTACAATTGCAAGATGTCTTGGTCTTCCTGAGCATAATGTGCGTGTAATTACAAGAAGGGTTGGAGGAGGCTTCGGTGGAAAGGC
TTTAAAATCCATTCCTGTAGCAACAGCATGTGCACTTGCAGCACACACTTTACAACGACCTGTCAGGATGTATCTCAATCGCAAGACTGACATGATAATG
GCAGGAGGGAGGCATCCCATGGAAATAACTTACAGTGTAGGGTTCAAATATAGTGGGAAAATCACAGCCTTACAACTCGATATACTGATTAATGCAGGGA
TATCTCCAGATATAAGTCCAGCCATGCCACATAACATGCTGGGTGCTCTTAAGAAATATGACTGGGGTGCTTTATCTTTTGATATAAAGATTTGCAAAAC
AAACCATTCAAGTAAATCAGCAATGCGGGGCCCTGGGGAGACACAAGCATCATTTATTGCGGAAGCTGTAATAGAACATGTAGCCTCCACCCTTTCCATG
GATGTTGATTCTGTGAGAAGCATAAATCTCCATACATACGACAGCCTTAAAATGTTCTATGTCTCTTCAGGTGAAGCTCATGAGTATTCTTTAACTTCAA
TGTGGGATAAGATAGCCATGTCATCAAACTTGAATCAAAGGACTGAAGCGGTAAAAGAGTTTAATCGGAGTAATGTGTGGAAGAAAAGAGGCATTTCTCG
AGTGCCTGTTGTGCATGAAGTGATGGTGAGACCAACTCCTGGGAAAGTTGGCATTCTAAGTGATGGGTCTGTTATTGTTGAAGTTGGAGGAATAGAGCTG
GGCCAGGGGCTCTGGACAAAGGTAAAACAGATGGCTGCATTTGCTCTCAATGCAATCAAATGTGATGGAGAAGGAGTACTCTTGGATAAAATACGGGTGA
TACAATCTGATACGCTGAGTTTAATTCAAGGAGGGTTTACGTCTGGTAGCACTACATCTGAATCAAGCTGTGAAGCAGTTAGACTTTGCTGTAAAACCTT
GGTTGAGAGACTAACACCTTTGAAGGAAAGGTTGCAGGTGCAGATGGGTTCTGTGAGATGGGAGATGCTCATACCCCAGGCATATTTGGAAGCTCTGAAC
TTGTCAGCCAATTCTTTCTTTGTCCCTGACTTGAATTCCATGCAATACTTAAACTACGGTGCAGCAGTCAGTGAGGTGGAGGTGAATCTTCTGACTGGCG
AAACAACAATTTTGAGGTCAGATATTATCTATGACTGCGGAAAAAGTCTGAACCCTGCTGTGGATTTAGGACAGATTGAAGGAGCTTTTGTCCAAGGAAT
CGGGTTTCTTATGCTTGAAGATTACACCACAAACCCAGATGGATTAGTGGTTTCTGACAGCACTTGGTCATATAAGATCCCTACAATAGACACGATACCG
AAACAGATCAATGTTGAAATCCATAACAGTGGACATCACAAAAATCGTGTTCTTTCATCAAAAGCTTGTGGTGAGCCACCACTACTCCTAGCAGCCTCAG
TTTACTTCGCTGCACAAGCAGCTATTAAAGAGGCCCGCAAACAGATGCGTTCATGGGGTTGTATAGAGCAGCCAGCATTCAACTTCCAGGTTCCTGCCAT
TATGCCAACCGTGAAGGAGCTTTGTGGGCTGGACAGTGTGGAGAGGTACTTACAGTGGAAAATCGGAAGCGAGAACTCCTCCAAGCTAGACTAG
AA sequence
>Potri.004G191300.1 pacid=42796296 polypeptide=Potri.004G191300.1.p locus=Potri.004G191300 ID=Potri.004G191300.1.v4.1 annot-version=v4.1
MRSLSFMCLPHELTQTQKTQSQKMEEEQIERETKSLVFAVNGQRFELSSVDPSMTLLEFLRTQTPFKGVKLGCGEGGCGACIVLLSKYDPVIDQVEDITV
SSCLTLLCSVNGCAITTTEGLGNSKDGFHSIHQRFAGFHSSQCGFCTPGMCISLFGALVNAEKTDRPKPSPGFSKLTAVEAEKAIAGNLCRCTGYRSIAD
ACKSFAADVDMEDLGLNCFWKKGESPDVKISRLPSYDHNNEICTFPEFLKCEIKSSFLLDSQKSSWYNPVSVKELQSLLKAIKGNNGARIKLVAGNTGMG
YYKDLQHYDNYINLCYVPELSIIGKDHTGIEIGATVTISKAIKALKTESNGEFLSESEMVFKKIAVQMEKIATQFVRNTGSVGGNLMMAQKNCFPSDIAT
ILLAAGSFVNIITDTMHEKLSLEDFLERPPLDSESILTSVKIPKWEPIKNDSSEKDCKMLFETYRAAPRPLGNALPYLNAAFLAEVCRWKSSGAITLNKC
MLAFGAYGTRHSIRAREVEEFLTGKKLTLDVLYESIKLVGASVVPEDGTTSSAYRSSLAVGFLFDFLGPLIDNVAKISNHWLDNYGSAAIFTVDEVKQKH
DQLDHVKVPTLLSLSKHVFEVTKEYHPVGEPVKKSGAALQASGEAIFVDDIPSPMNCLYGAFIYSTKPFAKVKSIKFKSKSLPFGVAALICFKDIPKDGE
NIGSKSIFGAEPLFADEMTRYAGERIALVVADTQKHADVASNLVVVDYDMENLEPPILTLEEAVKRSSFFEVPPFFYPKEVGDASKGMAEADHKILSAKM
KLGSQYYFYMENQSALALPDEDNCLVVYSSSQCPEFSHSTIARCLGLPEHNVRVITRRVGGGFGGKALKSIPVATACALAAHTLQRPVRMYLNRKTDMIM
AGGRHPMEITYSVGFKYSGKITALQLDILINAGISPDISPAMPHNMLGALKKYDWGALSFDIKICKTNHSSKSAMRGPGETQASFIAEAVIEHVASTLSM
DVDSVRSINLHTYDSLKMFYVSSGEAHEYSLTSMWDKIAMSSNLNQRTEAVKEFNRSNVWKKRGISRVPVVHEVMVRPTPGKVGILSDGSVIVEVGGIEL
GQGLWTKVKQMAAFALNAIKCDGEGVLLDKIRVIQSDTLSLIQGGFTSGSTTSESSCEAVRLCCKTLVERLTPLKERLQVQMGSVRWEMLIPQAYLEALN
LSANSFFVPDLNSMQYLNYGAAVSEVEVNLLTGETTILRSDIIYDCGKSLNPAVDLGQIEGAFVQGIGFLMLEDYTTNPDGLVVSDSTWSYKIPTIDTIP
KQINVEIHNSGHHKNRVLSSKACGEPPLLLAASVYFAAQAAIKEARKQMRSWGCIEQPAFNFQVPAIMPTVKELCGLDSVERYLQWKIGSENSSKLD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G27150 AtAAO3, At-AO3,... Arabidopsis thaliana aldehyde ... Potri.004G191300
[exp]
0 1 Pt-AAO3.3,AAO2
AT3G42170 BED zinc finger ;hAT family di... Potri.016G027201
[exp]
5.29 0.7751
AT1G06560 NOL1/NOP2/sun family protein (... Potri.005G204900
[exp]
14.42 0.7387
AT5G63960 EMB2780 DNA binding;nucleotide binding... Potri.005G065800
[exp]
15.49 0.7470
AT2G07680 ATMRP11, ABCC13 ATP-binding cassette C13, mult... Potri.003G182601
[exp]
19.18 0.7877
AT2G07050 CAS1 cycloartenol synthase 1 (.1) Potri.007G002200
[exp]
35.46 0.7446
AT3G13690 Protein kinase protein with ad... Potri.006G150100
[exp]
44.09 0.7583
AT2G28550 AP2_ERF TOE1, RAP2.7 TARGET OF EARLY ACTIVATION TAG... Potri.006G132400
[exp]
51.57 0.7346
AT5G62670 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPas... Potri.015G066000
[exp]
66.45 0.7449 HA2.2
AT2G28550 AP2_ERF TOE1, RAP2.7 TARGET OF EARLY ACTIVATION TAG... Potri.016G084500
[exp]
69.96 0.7229
AT4G00150 GRAS ATHAM3, SCL6, L... LOST MERISTEMS 3, ARABIDOPSIS ... Potri.003G110800
[exp]
70.48 0.7410

Potri.004G191300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.