Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21270 414 / 2e-134 WAK2 wall-associated kinase 2 (.1) AT1G21230 391 / 9e-126 WAK5 wall associated kinase 5 (.1) AT1G21210 390 / 2e-125 WAK4 wall associated kinase 4 (.1) AT1G21240 388 / 2e-124 WAK3 wall associated kinase 3 (.1) AT1G21250 385 / 2e-123 PRO25, WAK1 cell wall-associated kinase (.1) AT1G16130 357 / 2e-112 WAKL2 wall associated kinase-like 2 (.1) AT1G16120 341 / 1e-106 WAKL1 wall associated kinase-like 1 (.1) AT1G16260 341 / 1e-106 Wall-associated kinase family protein (.1.2) AT1G16160 333 / 6e-104 WAKL5 wall associated kinase-like 5 (.1) AT1G16150 335 / 1e-103 WAKL4 wall associated kinase-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G154600 [exp] 887 / 0 AT1G21270 447 / 2e-147 wall-associated kinase 2 (.1) Potri.009G154100 [exp] 873 / 0 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Potri.004G191450 [exp] 863 / 0 AT1G21270 474 / 7e-158 wall-associated kinase 2 (.1) Potri.004G192900 [exp] 847 / 0 AT1G21270 458 / 1e-151 wall-associated kinase 2 (.1) Potri.004G192700 [exp] 846 / 0 AT1G21270 464 / 4e-154 wall-associated kinase 2 (.1) Potri.004G192100 [exp] 839 / 0 AT1G21270 480 / 6e-160 wall-associated kinase 2 (.1) Potri.004G192400 [exp] 838 / 0 AT1G21270 466 / 2e-154 wall-associated kinase 2 (.1) Potri.004G192000 [exp] 743 / 0 AT1G21270 379 / 2e-121 wall-associated kinase 2 (.1) Potri.004G192500 [exp] 619 / 0 AT1G16260 525 / 2e-177 Wall-associated kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013383 [exp] 673 / 0 AT1G21270 427 / 4e-139 wall-associated kinase 2 (.1) Lus10013385 [exp] 624 / 0 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Lus10013384 [exp] 595 / 0 AT1G21270 430 / 3e-140 wall-associated kinase 2 (.1) Lus10038077 [exp] 429 / 6e-140 AT1G21270 576 / 0.0 wall-associated kinase 2 (.1) Lus10013387 [exp] 385 / 2e-127 AT1G21240 250 / 5e-76 wall associated kinase 3 (.1) Lus10034085 [exp] 383 / 5e-123 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10003063 [exp] 361 / 1e-114 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10004504 [exp] 291 / 2e-88 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10008105 [exp] 291 / 5e-88 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10014387 [exp] 213 / 5e-60 AT5G02070 493 / 8e-168 Protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08488 [poplar] [flax] WAK Wall-associated kinase CL0016 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.004G191400.5 pacid=42794400 polypeptide=Potri.004G191400.5.p locus=Potri.004G191400 ID=Potri.004G191400.5.v4.1 annot-version=v4.1 ATGATTTTGAAGTTGTGTGTGCCTGGGCTAATGATTTTGTTTCTACTGTGTTCAGTGGCAACGGCAATGGATCAAAGTGCAGCTGATTCGAAACCTGGCT GCCGAGACAAGTGTGGCAATGTTAGTGTTCCCTATCCCTTCGGTATTGATGAGTCCAGTTGCGCCGAAAACCAGTACTTGTTTCTAAATTGCAGTCAGAG TGATGGTCATGGTCCTGAGAAGTTGTGGTTTGCTAATATTCCTGTTCTCAGTATATCAGTTCTTGAAGGCTTAATGGTTGTCAGCATCTTCACAGCATAT GACTGCTACAACCAGTCAGGGGCAAAAATGAAGGAAACTAATCTCTCTATCCATCTCGGTCAGGGCCCCTACATGTTCTCAGACACCCGAAACATGTTCA CAGCTATAGGCTGTGATACTATGGGTTTTTTCAGTAACGCTGACGTCACATATGCAGCTGCTTGTATCTCCTCATGCGATGAAATGGTGAGCCTGGCCCA TAACAGTTCTTGCTCAGGTTCAGGATGCTGTCAGACCTCAATTCCCCAGGGCCTAAAGTCTCTGTCTATTCTCTCTAGCTCCATATACAACCACATAAAT GTTTCAGATTTCAATCCTTGTGGATATGCATTTTTAGCAGACAAAAGAACCTTCAAGGCTTCAGATTGGCAGCTCTCAGGTTTGCCAGATGGAAATGCTT CAGATGCTGTGATTGAATGGGTCGTCGAAACAAAGTCGTGTGAACAGGCTGGAATGAATACCAGTTCATATGCTTGCCGCAATAATACTAACTGCAATTA CTCTAAGAATGGCCAAGGATATCGTTGTTCATGCAAAGATGGATTCACAGGAAACCCCTATCTTTCACCAGGATGTCAAGATATTGACGAGTGTGCTGAT CGACAAAGGTATCCTTGCAAAGGAAAGTGCAAGAACACGCCTGGAAATTACACATGCAGTTGTCCAATGGGCATGCACGGTGATGGTAAAACAGGTTGTC AAGGATTTGGTATCGCCACCATTGCTTCAGTTACTGGAGGAACTATTTCCCTTGTGATCATCGGTGTGCTGCTCTATATAATTTTGAGGAAATTAAGAAA GGTTAAAAACTTTAGAGAAAATGGAGGCATGGTTTTAAAGCATCAACGAGTAAGGATTTTCAGTGAGGCAGAGCTGGCAAAAGCAACCGAAAATTACAAT GATCATAAGAAACTTGGCGAAGGAGGCTTTGGCTGTGTTTACAAAGGAGTTTTACCAGATAATACCCAACTTGCAGTGAAGAAGTTTAAGGGAGTAGACA AGGCTCAAATGAACGAGGAATTTCAGCATGAAATTGGCATGGTTTTGCAAGTCAATCACAAGAATGTGGTCAAGCTATTAGGCCTGTGTTTGCAGACCAA AGTGCCTTTGCTAGTTTATGAATTCATTTCAAATGGAACTCTTTTCCACCATATCCATGATAAGAAGTCCCAAGTGTTGAGAACGTGGACAGACCGTTTG AGAGTAGCTGCTGAGACTGCACTTGCACTTGAATATTTGCATTCTTTAGCAAACCCTCCAATGATTCACGGGGATGTCAAGACGGTGAACATACTTTTGG ATGAGGATGGAACAGCAAAGATAGCCGATTTTGGAGCTTCAGTGCTGATCTCACCTGGCCAAACGGATATAGCCACAAAAATACAGGGGACTTTTGGCTA CCTGGATCCTGAGTATCTCATGACAGGTAATTTAACTGTAAAGAGCGATGTCTTCAGCTTCGGAGTAGTTCTTGTGGAACTTATGACAGGACAGAAGCCA AACTCTAACGCTAAGTCTGGAGAGAAGCGTAACGTGGTTCAAGACTTCATCTCATCATTAGAAAACAATCATCTCTTTAAGATTTTAGATTTTGAGGCAG ATGAAGAAGAGCTGGAGGAGATTGAAGTGGTTGCCGAGCTTGCAAAAAGATGTGTAAATAGCAGTGGTGTGAAAAGGCCAAGCATGAAGGAAGTATCTGA CGAGCTTTCTAGGCTAACATCACTCCATGAGGACTTGTGGGGTCAGAAAAATAGTGAAGAGACGGAGCATTTGCTAGGAAAATCAGCACTCTCTTTCAAT GAGAATGCAAGTCCTTCAATGAATGAACCTCAGATGGCTCAGACTGTCATATCCTTGGAGATTGAAAATTACACGAACAGTATTTAA
AA sequence Show only first row Show all	>Potri.004G191400.5 pacid=42794400 polypeptide=Potri.004G191400.5.p locus=Potri.004G191400 ID=Potri.004G191400.5.v4.1 annot-version=v4.1 MILKLCVPGLMILFLLCSVATAMDQSAADSKPGCRDKCGNVSVPYPFGIDESSCAENQYLFLNCSQSDGHGPEKLWFANIPVLSISVLEGLMVVSIFTAY DCYNQSGAKMKETNLSIHLGQGPYMFSDTRNMFTAIGCDTMGFFSNADVTYAAACISSCDEMVSLAHNSSCSGSGCCQTSIPQGLKSLSILSSSIYNHIN VSDFNPCGYAFLADKRTFKASDWQLSGLPDGNASDAVIEWVVETKSCEQAGMNTSSYACRNNTNCNYSKNGQGYRCSCKDGFTGNPYLSPGCQDIDECAD RQRYPCKGKCKNTPGNYTCSCPMGMHGDGKTGCQGFGIATIASVTGGTISLVIIGVLLYIILRKLRKVKNFRENGGMVLKHQRVRIFSEAELAKATENYN DHKKLGEGGFGCVYKGVLPDNTQLAVKKFKGVDKAQMNEEFQHEIGMVLQVNHKNVVKLLGLCLQTKVPLLVYEFISNGTLFHHIHDKKSQVLRTWTDRL RVAAETALALEYLHSLANPPMIHGDVKTVNILLDEDGTAKIADFGASVLISPGQTDIATKIQGTFGYLDPEYLMTGNLTVKSDVFSFGVVLVELMTGQKP NSNAKSGEKRNVVQDFISSLENNHLFKILDFEADEEELEEIEVVAELAKRCVNSSGVKRPSMKEVSDELSRLTSLHEDLWGQKNSEETEHLLGKSALSFN ENASPSMNEPQMAQTVISLEIENYTNSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G191400 [exp]	0	1
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.001G280000 [exp]	1.00	0.9883
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.001G305400 [exp]	2.00	0.9803	1
AT2G23770			protein kinase family protein ...		Potri.005G128300 [exp]	3.00	0.9802
AT1G18390			Protein kinase superfamily pro...		Potri.010G145400 [exp]	3.46	0.9678
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Potri.002G149300 [exp]	4.47	0.9776
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Potri.016G049200 [exp]	4.58	0.9759
AT1G68940			Armadillo/beta-catenin-like re...		Potri.010G136500 [exp]	5.29	0.9783
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125000 [exp]	6.70	0.9712
AT1G49000			unknown protein		Potri.010G130600 [exp]	6.92	0.9730
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Potri.016G027800 [exp]	8.94	0.9687

Compare expression of checked genes

Potri.004G191400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.