Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21270 275 / 3e-84 WAK2 wall-associated kinase 2 (.1) AT1G21250 238 / 1e-70 PRO25, WAK1 cell wall-associated kinase (.1) AT1G21230 238 / 2e-70 WAK5 wall associated kinase 5 (.1) AT1G21240 232 / 3e-68 WAK3 wall associated kinase 3 (.1) AT1G21210 224 / 2e-65 WAK4 wall associated kinase 4 (.1) AT1G16260 192 / 1e-53 Wall-associated kinase family protein (.1.2) AT1G79670 182 / 4e-50 WAKL22, RFO1 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) AT1G16130 181 / 9e-50 WAKL2 wall associated kinase-like 2 (.1) AT1G17910 179 / 5e-49 Wall-associated kinase family protein (.1) AT1G16110 177 / 2e-48 WAKL6 wall associated kinase-like 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G191450 [exp] 949 / 0 AT1G21270 474 / 7e-158 wall-associated kinase 2 (.1) Potri.009G154600 [exp] 630 / 0 AT1G21270 447 / 2e-147 wall-associated kinase 2 (.1) Potri.004G192100 [exp] 614 / 0 AT1G21270 480 / 6e-160 wall-associated kinase 2 (.1) Potri.004G192000 [exp] 610 / 0 AT1G21270 379 / 2e-121 wall-associated kinase 2 (.1) Potri.009G154100 [exp] 609 / 0 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Potri.004G192700 [exp] 602 / 0 AT1G21270 464 / 4e-154 wall-associated kinase 2 (.1) Potri.004G192400 [exp] 593 / 0 AT1G21270 466 / 2e-154 wall-associated kinase 2 (.1) Potri.004G192900 [exp] 589 / 0 AT1G21270 458 / 1e-151 wall-associated kinase 2 (.1) Potri.004G191400 [exp] 555 / 0 AT1G21270 414 / 2e-134 wall-associated kinase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013383 [exp] 440 / 2e-147 AT1G21270 427 / 4e-139 wall-associated kinase 2 (.1) Lus10013385 [exp] 396 / 1e-130 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Lus10013384 [exp] 365 / 2e-118 AT1G21270 430 / 3e-140 wall-associated kinase 2 (.1) Lus10038077 [exp] 279 / 9e-86 AT1G21270 576 / 0.0 wall-associated kinase 2 (.1) Lus10034085 [exp] 233 / 6e-69 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10003063 [exp] 204 / 5e-58 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10013387 [exp] 160 / 3e-44 AT1G21240 250 / 5e-76 wall associated kinase 3 (.1) Lus10008435 [exp] 144 / 1e-37 AT5G37290 184 / 6e-56 ARM repeat superfamily protein (.1.2) Lus10008105 [exp] 116 / 2e-27 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10004504 [exp] 113 / 2e-26 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.004G191500.2 pacid=42796324 polypeptide=Potri.004G191500.2.p locus=Potri.004G191500 ID=Potri.004G191500.2.v4.1 annot-version=v4.1 ATGACTCTCCAGATGAGGGTGTCTTTGCTCATGATGTTGGTAATGTTCTGGCTTATGACAACTGAATCTTCAAGCCAGGATGTGAAACCTGGGTGCCAAG AAAAATGTGGGAATGTTAGTGTTCCTTATCCCTTTGGGATTGGGAAACCTGACTGTGCCATGGATGAGCATTTCTTTCTGAATTGCAGTTCAAATGATGA TGGTGCTGAACCGTGGTTTAGAAGCAACATGACTGCTCGTAAAATATCGGTGCCGGAGGGCACAGTGACTGTAAGCATTGGTACGGCATATAGCTGCTAT GACAAATCGGGGAATGAAACTCGCTATTTCGATCAGTCTATGAAACTTGGACCAGGCCCTTTTACGTTCTCAGACACCCTAAACATATTCACAGTTATCG GCTGTGATACGGCTGCCCAGGTGACCAACGAAGAGTTTACATATGGAGTTGCCTGTCTATCCCTATGCACAAAATATGTGAACATGACAGATGCGAATGC TTGCTCAGGTTCTGGATGTTGCCATACCTCAATTCCCATGGGCCTCAAGTCACTTGATATTTCATCTTATAGTTTTTTCAACCACTCGAATGTTTCGGAT TTCAATCCCTGTGGATTTGCATTTTTAGCGGATACGCGCTCCTTTCATCTTTCAGATTGGCCGCTCAGTCGTATGGCAGATGGAAAAGATACATCAGATG TTGCGATTGAATGGGTAGTTAAGAACGAGACATGTGAACAGGCTAAAGCTAATACAAGTGCATATGCTTGTGGCATTAATACAAACTGCACTTATTCGGA GAATGGTCAGGGATATCGTTGCGTATGCAATGAAGGGTTCGAAGGAAACCCCTATCTTGAACAAGGATGCCAAGATATTGATGAGTGCAAATATCCAGAA AGATACCCATGTGAAGGTAAATGCAAGAACACTATTGGAAGTTACAAATGTCACTGTCCATTTGGCAAGTATGCTAATGGTGAAAACGGTTGTCAGAGAT TTGGTGGTATCATAATTATATCAGTAGCAGTTGGGGCAGCAGTTTTCCTATTGATTATTTGTTTCCTACTCTATGTAATCTGCACAAAAAGAAGAAGGGA CAAGAACTTCAGAAAAAATGGGGGAATGGTTTTAAAGCATCAGCGAGTAAGGATTTTCAGAGAGGCAGAGCTGGAAAAGGCAACCAACAATTATGTTGAT GACCAGAAACTTGGGGAAGGTGGTTTTGGTTACGTTTACAAGGGAGTTTTAGCAGATAATACCCTGGTTGCTGTCAAGAAGTTTAAAGGGGTAGACAAGG ATCAGCTGAATGAAGAATTTCAGAAAGAAATTGGCATTGTTTCACAGGTCAACCACAGGAATGTGGTCAATCTCTTGGGCTTGTGTTTGGAAATCAAAGT GCCATTGTTAGTTATGAGTTCATTTCAAATGGAACTCTTTACAAGCACATCCATGATAAAAGGTCACAGATATTAG
AA sequence Show only first row Show all	>Potri.004G191500.2 pacid=42796324 polypeptide=Potri.004G191500.2.p locus=Potri.004G191500 ID=Potri.004G191500.2.v4.1 annot-version=v4.1 MTLQMRVSLLMMLVMFWLMTTESSSQDVKPGCQEKCGNVSVPYPFGIGKPDCAMDEHFFLNCSSNDDGAEPWFRSNMTARKISVPEGTVTVSIGTAYSCY DKSGNETRYFDQSMKLGPGPFTFSDTLNIFTVIGCDTAAQVTNEEFTYGVACLSLCTKYVNMTDANACSGSGCCHTSIPMGLKSLDISSYSFFNHSNVSD FNPCGFAFLADTRSFHLSDWPLSRMADGKDTSDVAIEWVVKNETCEQAKANTSAYACGINTNCTYSENGQGYRCVCNEGFEGNPYLEQGCQDIDECKYPE RYPCEGKCKNTIGSYKCHCPFGKYANGENGCQRFGGIIIISVAVGAAVFLLIICFLLYVICTKRRRDKNFRKNGGMVLKHQRVRIFREAELEKATNNYVD DQKLGEGGFGYVYKGVLADNTLVAVKKFKGVDKDQLNEEFQKEIGIVSQVNHRNVVNLLGLCLEIKVPLLVMSSFQMELFTSTSMIKGHRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G191500 [exp]	0	1
AT1G16060	AP2_ERF	ADAP	ARIA-interacting double AP2 do...		Potri.006G179900 [exp]	1.00	0.9992
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.005G088600 [exp]	3.46	0.9987
AT1G09910			Rhamnogalacturonate lyase fami...		Potri.011G006200 [exp]	4.00	0.9989
					Potri.008G193650 [exp]	4.35	0.9961
AT1G59740			Major facilitator superfamily ...		Potri.005G001400 [exp]	6.32	0.9988
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.003G118500 [exp]	7.48	0.9978
AT5G59100			Subtilisin-like serine endopep...		Potri.010G196800 [exp]	8.94	0.9978
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.009G143600 [exp]	9.79	0.9965
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G075300 [exp]	10.48	0.9973
AT5G67360		ARA12	Subtilase family protein (.1)		Potri.014G026600 [exp]	10.95	0.9971

Compare expression of checked genes

Potri.004G191500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.