Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55710 228 / 2e-76 AtTic20-V translocon at the inner envelope membrane of chloroplasts 20-V, unknown protein AT2G47840 112 / 1e-30 AtTic20-II translocon at the inner envelope membrane of chloroplasts 20-II, Uncharacterised conserved protein ycf60 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G084900 [exp] 97 / 5e-25 AT2G47840 196 / 2e-63 translocon at the inner envelope membrane of chloroplasts 20-II, Uncharacterised conserved protein ycf60 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031203 [exp] 246 / 2e-83 AT5G55710 263 / 3e-90 translocon at the inner envelope membrane of chloroplasts 20-V, unknown protein Lus10031781 [exp] 244 / 1e-82 AT5G55710 267 / 1e-91 translocon at the inner envelope membrane of chloroplasts 20-V, unknown protein Lus10020219 [exp] 99 / 1e-25 AT2G47840 222 / 1e-73 translocon at the inner envelope membrane of chloroplasts 20-II, Uncharacterised conserved protein ycf60 (.1) Lus10026842 [exp] 97 / 7e-25 AT2G47840 219 / 1e-72 translocon at the inner envelope membrane of chloroplasts 20-II, Uncharacterised conserved protein ycf60 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF16166 [poplar] [flax] TIC20 Chloroplast import apparatus Tic20-like
Representative CDS sequence Show only first row Show all	>Potri.004G191700.1 pacid=42796002 polypeptide=Potri.004G191700.1.p locus=Potri.004G191700 ID=Potri.004G191700.1.v4.1 annot-version=v4.1 ATGTCCACTCTTCTCTTTCCACAAGCCCCTCTTACCCTCTCCCAAAAACCCTTCCTTCTCTCCCTCAGAAACCCATCTTTTTTGCCTCACGCAAGAAAAT GGAAAGGGCCCAGAAGACTAATTTTAGCCAAATCCAACGGTAACGATTCAGTAGACACAACAGACAGGATAATCTCTGCCGTCTGTTACTTCTACCCATT CTTTGACGGGATCCAGTACGGAAAATACGTCATAACCCAGTTTTCTCCAATTCAAGCTCTCATCCAGCCTCTGTTCCCAGCTATAAAAGTCTTTAAGAGC TTTCCCTTAAATGGGTTTTTGGTGTTTTTGACTCTTTACTTTGTTGTTGTGAGAAACTCCAATTTTAGCAGATATGTGAGGTTCAATACCATGCAAGCTA TAGTGCTTGATGTGTTGTTGATATTTCCTGATTTGTTAGAGAGGAGTTTTAATCCAAGAGATGGGTTGGGATTGGATTTGTTGATGAGTTTGGACAGTAC TGTGTTTTTGTACCTTTTGGTTTGTTTGATTTATGGGTCTACTTCTTGTTTGTTTGGTCAGATTCCTAGGTTGCCCATTGTTGCTGAGGCTGCTGATAGG CAGGTTCTTTAG
AA sequence Show only first row Show all	>Potri.004G191700.1 pacid=42796002 polypeptide=Potri.004G191700.1.p locus=Potri.004G191700 ID=Potri.004G191700.1.v4.1 annot-version=v4.1 MSTLLFPQAPLTLSQKPFLLSLRNPSFLPHARKWKGPRRLILAKSNGNDSVDTTDRIISAVCYFYPFFDGIQYGKYVITQFSPIQALIQPLFPAIKVFKS FPLNGFLVFLTLYFVVVRNSNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNPRDGLGLDLLMSLDSTVFLYLLVCLIYGSTSCLFGQIPRLPIVAEAADR QVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55710		AtTic20-V	translocon at the inner envelo...		Potri.004G191700 [exp]	0	1
AT2G27290			Protein of unknown function (D...		Potri.009G161800 [exp]	2.00	0.9707
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Potri.010G237200 [exp]	3.31	0.9716
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.014G021400 [exp]	6.63	0.9519	Pt-IFS1.54
AT1G06430		FTSH8	FTSH protease 8 (.1)		Potri.002G220366 [exp]	6.92	0.9607
					Potri.005G164800 [exp]	7.14	0.9532
AT2G41950			unknown protein		Potri.006G194600 [exp]	11.48	0.9594
AT3G46610			Pentatricopeptide repeat (PPR-...		Potri.017G070800 [exp]	11.87	0.9630
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Potri.002G215100 [exp]	11.95	0.9558
AT3G10670		ABCI6, ATNAP7	ATP-binding cassette I6, non-i...		Potri.008G012500 [exp]	12.44	0.9594	NAP7.2
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Potri.002G012000 [exp]	13.41	0.9586	FTSH2.2

Compare expression of checked genes

Potri.004G191700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.