Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21270 378 / 2e-121 WAK2 wall-associated kinase 2 (.1) AT1G21230 353 / 5e-112 WAK5 wall associated kinase 5 (.1) AT1G21240 353 / 9e-112 WAK3 wall associated kinase 3 (.1) AT1G21250 347 / 3e-109 PRO25, WAK1 cell wall-associated kinase (.1) AT1G21210 346 / 4e-109 WAK4 wall associated kinase 4 (.1) AT1G16260 318 / 1e-98 Wall-associated kinase family protein (.1.2) AT1G16130 317 / 7e-98 WAKL2 wall associated kinase-like 2 (.1) AT1G19390 310 / 1e-94 Wall-associated kinase family protein (.1) AT1G79670 295 / 1e-89 WAKL22, RFO1 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) AT1G16120 291 / 2e-88 WAKL1 wall associated kinase-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G192100 [exp] 964 / 0 AT1G21270 480 / 6e-160 wall-associated kinase 2 (.1) Potri.004G192700 [exp] 947 / 0 AT1G21270 464 / 4e-154 wall-associated kinase 2 (.1) Potri.004G192400 [exp] 915 / 0 AT1G21270 466 / 2e-154 wall-associated kinase 2 (.1) Potri.004G192900 [exp] 910 / 0 AT1G21270 458 / 1e-151 wall-associated kinase 2 (.1) Potri.009G154600 [exp] 909 / 0 AT1G21270 447 / 2e-147 wall-associated kinase 2 (.1) Potri.004G191450 [exp] 905 / 0 AT1G21270 474 / 7e-158 wall-associated kinase 2 (.1) Potri.009G154100 [exp] 899 / 0 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Potri.004G191400 [exp] 765 / 0 AT1G21270 414 / 2e-134 wall-associated kinase 2 (.1) Potri.004G192500 [exp] 726 / 0 AT1G16260 525 / 2e-177 Wall-associated kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013383 [exp] 582 / 0 AT1G21270 427 / 4e-139 wall-associated kinase 2 (.1) Lus10013385 [exp] 554 / 0 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Lus10013384 [exp] 509 / 9e-172 AT1G21270 430 / 3e-140 wall-associated kinase 2 (.1) Lus10038077 [exp] 407 / 2e-132 AT1G21270 576 / 0.0 wall-associated kinase 2 (.1) Lus10034085 [exp] 357 / 1e-113 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10013387 [exp] 337 / 1e-109 AT1G21240 250 / 5e-76 wall associated kinase 3 (.1) Lus10004504 [exp] 250 / 1e-73 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10008105 [exp] 244 / 3e-71 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10003063 [exp] 226 / 1e-64 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10014387 [exp] 174 / 3e-46 AT5G02070 493 / 8e-168 Protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.004G192000.1 pacid=42794510 polypeptide=Potri.004G192000.1.p locus=Potri.004G192000 ID=Potri.004G192000.1.v4.1 annot-version=v4.1 ATGTGGGTGTCTTGGCTGATGATGTTACTATTATTGTGGCCAGTGGCAGCTACAACTAGGTCAGATATTGTGAAACCTGGCTGCCTAGAAACGTGTGGGA ATGTTAGTGTTCCTTACCCGTTTGGGATTTTGGAACGAAGTTGTGCCATGAACGACTTCTTCTTCCTAAACTGCAGTTCGAACGATGAAGGTCATCCTGA ACTGTGGTTTGGAACTGGCATGGCTATTCACAATATATCACAGCTGGAGGGCACAGTAACTCTAGGCATTGATGCAGCATTCAAATGCTATAACAAAGCA GGGATACAGACAGAATCTTTCGCACAGTCTATGACCCTTGGATCAGGCCCCTTCATGTTCTCACACCTCCGAAATATATTCACAGCTATTGGTTGCGATA CCTTTGCCCAGGTGACCAACTATGAGTTGACATATGGAGCTGCCTGTCTCTCCTTGTGCACAGAATATGTGAACATGTCCGATGGAAATCCTTGCTCAGG TTCTGGATGCTGCCAAACCTCAATCCCTAAGGGCCTCAAATCACTTGATATTTCATTATTTAGTTTTTACAACTACACGAACGTTTCGGACTTCAATCTC TGTGGATTTGCTTTTTTAGTGGACAAGAACTCCTTGAAGATTTCAGATTGGCCGCTCTCTCGCAAGCCAAAATATGGAAAAGATGCATATACAACAGATA TTGTGATTGAATGGGTAGTTAAAAATGAGACTTGCGAACAGGCTAAAGCTAATCAAAGTGCATATGCTTGTGGCACTAATGCAAATTGCACCTACCCTGA GAGTGGTCAAGGATATCGTTGCTTATGCAATGAAGGGTTCGAAGGAAATCCCTATCTCCAAGAAGGATGCCAAGATATCGATGAGTGCAAGGATCCAGAA AGATATCCATGTCATGGTAGATGCAAGAACACCATTGGGAATTACAAGTGTCGATGTCCACTTGGTATGTATGGTGATGGTAAAATAGGTTGTCAAGGAT TTGGTATCATCACATTAATTACAGCTATTGGAGCAGCCATTTTGCTTGTAATAATTTGTCTTCTACTGTACATGATGGAGAACGGGGGAGTGGTTGTAAA GCACCAACGAGTAAGGATTTTCAGCGAGGCGGAGCTGGAAAAGGCAACAAAAAATTATGATGATGATCAGAAACTTGAAGAAGGTGGTTTTGGTTCTGTT TACAAAGGAGTTCTAGCAGATGGTGTCCAAGTTGCAGTCAAGAAGTTTAAAGGGGTAGACAAGGCTCAGATGAATGAGGAATTTCAAAAGGAAATGGGCG TTGTGTCACAGGTCAATCACAAGAATGTGGTGAAGCTCTTGGGCCTGTGTTTGGAGACCAAAGTGCCATTGTTAGTTTATGAGTTCATTTCAAATGGAAC TCTTTTCAAGCACATACATGACAAAAGGTCGCAGTTACTAGCTTCCTGGAGCAGTCGTCTGAGGATAGCATCAGAGATTGCCCTTGCGCTTAATTACCTG CATTCTCTTGCAGACCCTCCGATTATTCATGGAGATGTCAAGTCGGTGAACATACTCTTAGACAACAACAACACAGCAAAGGTTGCAGATTTTGGAGCTT CATATCTTATGACGGGTATTTTAACCGCAAGGAGTGATGTCTTCAGCTTTGGGTTCTTGTGGAGCTTCTCACGGGAGAAAAGCCAAACTCCAGTTTCCAG TTCTGGAGAGAAACGGAACCTCATTCAACACTTTATCTCAGCACTGGAAACTAATAATCTTTTCAGAATTTTGGATTTCCAGGCAGCTGATGAAGGTGAA ATGGATGAGATTGAAGCTGTAGCTGAGCTTGCAAAAGGATGTCTGAATAGCATGGGAGTAAACCGGCCAACCATGAAGGAAGTGTCTGATGAGCTTTCTA AGCTTAAAGATTTTCATCAGAAATCATGGGCTCAGCAAAATAGCGACGAGACGAACTACTTGTTAGGCGAATCATCACAATCTTTTGGCAAGAAAGTGTT GGAAATTTGGCAGAAATAG
AA sequence Show only first row Show all	>Potri.004G192000.1 pacid=42794510 polypeptide=Potri.004G192000.1.p locus=Potri.004G192000 ID=Potri.004G192000.1.v4.1 annot-version=v4.1 MWVSWLMMLLLLWPVAATTRSDIVKPGCLETCGNVSVPYPFGILERSCAMNDFFFLNCSSNDEGHPELWFGTGMAIHNISQLEGTVTLGIDAAFKCYNKA GIQTESFAQSMTLGSGPFMFSHLRNIFTAIGCDTFAQVTNYELTYGAACLSLCTEYVNMSDGNPCSGSGCCQTSIPKGLKSLDISLFSFYNYTNVSDFNL CGFAFLVDKNSLKISDWPLSRKPKYGKDAYTTDIVIEWVVKNETCEQAKANQSAYACGTNANCTYPESGQGYRCLCNEGFEGNPYLQEGCQDIDECKDPE RYPCHGRCKNTIGNYKCRCPLGMYGDGKIGCQGFGIITLITAIGAAILLVIICLLLYMMENGGVVVKHQRVRIFSEAELEKATKNYDDDQKLEEGGFGSV YKGVLADGVQVAVKKFKGVDKAQMNEEFQKEMGVVSQVNHKNVVKLLGLCLETKVPLLVYEFISNGTLFKHIHDKRSQLLASWSSRLRIASEIALALNYL HSLADPPIIHGDVKSVNILLDNNNTAKVADFGASYLMTGILTARSDVFSFGFLWSFSREKSQTPVSSSGEKRNLIQHFISALETNNLFRILDFQAADEGE MDEIEAVAELAKGCLNSMGVNRPTMKEVSDELSKLKDFHQKSWAQQNSDETNYLLGESSQSFGKKVLEIWQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G192000 [exp]	0	1
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.007G074850 [exp]	6.70	0.8253
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.007G074900 [exp]	8.24	0.8183
AT3G45290		ATMLO3, MLO3	MILDEW RESISTANCE LOCUS O 3, S...		Potri.003G002500 [exp]	12.24	0.7801
AT4G23860			PHD finger protein-related (.1...		Potri.003G140000 [exp]	18.33	0.7560
AT4G13030			P-loop containing nucleoside t...		Potri.002G247400 [exp]	22.29	0.7702
AT5G54470	CO		B-box type zinc finger family ...		Potri.001G414700 [exp]	25.09	0.7347
AT3G25910			Protein of unknown function (D...		Potri.006G154300 [exp]	25.21	0.7188
AT3G02470		SAMDC	S-adenosylmethionine decarboxy...		Potri.004G106800 [exp]	28.56	0.7114	Pt-SAMDC.3
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Potri.016G054700 [exp]	41.35	0.7147
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.014G060200 [exp]	44.24	0.7231

Compare expression of checked genes

Potri.004G192000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.