Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20930 886 / 0 TSL TOUSLED, Protein kinase superfamily protein (.1) AT2G45490 122 / 1e-30 ATAUR3 ataurora3 (.1) AT4G32830 117 / 5e-29 ATAUR1 ataurora1 (.1) AT2G25880 117 / 8e-29 ATAUR2 ataurora2 (.1.2) AT3G13530 121 / 5e-28 MAPKKK7, MAP3KE1 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) AT3G07980 116 / 1e-26 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1) AT2G17890 112 / 6e-26 CPK16 calcium-dependent protein kinase 16 (.1) AT5G25110 107 / 2e-24 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT3G53930 108 / 3e-24 Protein kinase superfamily protein (.1.2) AT5G10930 106 / 4e-24 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G155400 [exp] 1156 / 0 AT5G20930 914 / 0.0 TOUSLED, Protein kinase superfamily protein (.1) Potri.006G235000 [exp] 122 / 1e-30 AT4G32830 553 / 0.0 ataurora1 (.1) Potri.018G057700 [exp] 119 / 9e-30 AT4G32830 544 / 0.0 ataurora1 (.1) Potri.005G094200 [exp] 124 / 4e-29 AT3G13530 1979 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Potri.006G080500 [exp] 115 / 2e-28 AT2G45490 470 / 2e-169 ataurora3 (.1) Potri.007G070100 [exp] 119 / 1e-27 AT3G13530 1960 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Potri.013G090800 [exp] 116 / 4e-27 AT3G01090 728 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.010G071400 [exp] 111 / 5e-27 AT1G08650 298 / 1e-101 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.008G166500 [exp] 110 / 9e-27 AT1G08650 287 / 2e-97 phosphoenolpyruvate carboxylase kinase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036170 [exp] 822 / 0 AT5G20930 753 / 0.0 TOUSLED, Protein kinase superfamily protein (.1) Lus10019383 [exp] 724 / 0 AT5G20930 649 / 0.0 TOUSLED, Protein kinase superfamily protein (.1) Lus10020580 [exp] 119 / 1e-29 AT2G45490 482 / 3e-174 ataurora3 (.1) Lus10005487 [exp] 119 / 2e-29 AT4G32830 545 / 0.0 ataurora1 (.1) Lus10024448 [exp] 117 / 1e-27 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10006033 [exp] 113 / 3e-27 AT4G32830 488 / 2e-175 ataurora1 (.1) Lus10006266 [exp] 110 / 1e-26 AT2G45490 427 / 1e-152 ataurora3 (.1) Lus10007448 [exp] 114 / 2e-26 AT5G25110 650 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10017408 [exp] 109 / 3e-24 AT3G13530 1761 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Lus10010209 [exp] 108 / 7e-24 AT3G13530 1800 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.004G193300.4 pacid=42796650 polypeptide=Potri.004G193300.4.p locus=Potri.004G193300 ID=Potri.004G193300.4.v4.1 annot-version=v4.1 ATGTCTGATGATATGCTAATGCATTTCTCTTCAAACTCTTCAAACCAATCGGACCAGTCTTTGCCTACTAAAATCGCTAAACTTGAAGCTCGTATGGCTG GCAAAGTATCTTCTGTCTGTCCTGCCCCCCATGTTCAGCTCCAGCAGCAACAACAGAAACAGCCCATTTGGTCTTCTGTTTCTCCGGGTCCGAGATTTGG GCCTCCTGAGGAATTGGCAGAGTCTAGTGATTCTGACGATGATAATGGAGGGGGATTTCTTATACAAGCAAACACTCAGAAGCGCCGGAGATTACAAGAA AATGATAATTCAGCTGTCTTTGAACATCTTGAGACACAGACAGTGAATGATGGAAAGCAAAAGATTGGGAAAACTGTAGAGACCAAGGTCAGTACTGATG CAAATAGGAGAAAACAAGGTCGTGGAAGGGGGCATTCTAATTCTAGTAGAGGTCGTGGTGTGAGAGCTAATGATCAGACGAGATCACAGAGTTCTGTTTC AGCAGCCTTGCCTTCAAATGGTCAGCTTGAGAATTCATGTCACAAGGATAGCACGGCCAAAGAGCACTTCCAAAATGGTGATTGCACATCTTTAGAGGAG GAGCTCACATCTTTACATGCTAAAGTGGCTGCACTAGAGGATGATCTACGTAAATCTTGTCAAGAGGCCTCCAATAATCATGATCTCTGCCACCAGTTAG AAAAGGAATTGAAGGAACTTAAAGATCTTGAACAACAAATGAAGCCAAAGAGGACCAAAATCATATCGGATCTATTGATATCTGTTTCCAAAGCAGAGAG ACAAGAAGCAAGGATGAAAGTTCGCCAAGATTCTTTAAGACTTGGCAGCGTGGGTGTTATCAGAGCTGGAACTATCATATCCGAGACGTGGGAGGATGGG CAAATGCTGAAAGATCTAAATATCCATCTTAGACAGTTATTAGAAACCAAGGAGGCTGTTGAGCGGCAGCGGAAATCATTGAAGAAGCGACAATCTGACA AAGGTGATGGTACAGATGCAGAATCAGGAGCACAAGAAGAAGATTTTCTCATCCAGGATGAGATTTTTAAATCTCGTCTAGTGAGCATCAAGCGTGAGGA AGAGACAATTTTGCGTGAGAGAGACCGCTATGAACTGGAAAAGGGACGGCTTATACGTGAATTGAAAAGGATACGAGATGAGAATGGTTCACGTTTTAAT AATTTTCAGATTTTAAATCACCGATACGCCCTTTTAAACCTTCTTGGGAAAGGAGGATTTAGTGAGGTTTACAAGGCTTATGATTTGGTGGAGCATAGAT ATGTTGCATGTAAGCTACATGGTCTGAATGTTCAATGGAGTGAGGATAAGAAGCAAAGTTACATACGGCATGCACTGCGAGAGTACAATATTCACAAGAC CTTGGTGCATAATCACATTGTTCGGCTTTGGGACATTTTTGAAATTGACCAGAATACATTCTGCACAATCTTAGAGTACTGTAGTGGTAAAGATCTTGAT GCTGTTCTTAAAGCTACACCTGTATTACCTGAAAGAGAAGCTAGGATCATTATTGTCCAGATATTTCAAGGCCTTGTATACTTGAATAAGAGAGCACAGA AGATTATCCATTATGATCTGAAGCCTGGGAATGTTCTTTTTGATGAATTTGGTATCGCAAAAGTTACTGATTTTGGTCTTAGCAAGATAGTGGAGGAAGA TGTTGGATCCCAGGGAATGGAACTTACATCTCAGGGAGCTGGAACTTATTGGTATTTGCCACCAGAATGCTTTGAGCTCAGCAAGACCCCTTTAATATCA TCAAAGGTTGATGTCTGGTCAGCTGGAGTTCTGTTTTACCAAATGCTCTTTGGTAGACGCCCTTTTGGGCATGACCAAACTCAAGAACGAATACTACGCG AAGATACAATTATCAAAGCTCGCAGGGTTGAATTCCCTACAAAGCCTACTATCTCAAATGAGGCGAAGGATTTGATTCGTCAATGTTTGACCTATAACCA AGCAGAGAGACCAGATGTTTTGACCATTGCTCAAGATCCATATCTTACATACTTGAAGAAGTAA
AA sequence Show only first row Show all	>Potri.004G193300.4 pacid=42796650 polypeptide=Potri.004G193300.4.p locus=Potri.004G193300 ID=Potri.004G193300.4.v4.1 annot-version=v4.1 MSDDMLMHFSSNSSNQSDQSLPTKIAKLEARMAGKVSSVCPAPHVQLQQQQQKQPIWSSVSPGPRFGPPEELAESSDSDDDNGGGFLIQANTQKRRRLQE NDNSAVFEHLETQTVNDGKQKIGKTVETKVSTDANRRKQGRGRGHSNSSRGRGVRANDQTRSQSSVSAALPSNGQLENSCHKDSTAKEHFQNGDCTSLEE ELTSLHAKVAALEDDLRKSCQEASNNHDLCHQLEKELKELKDLEQQMKPKRTKIISDLLISVSKAERQEARMKVRQDSLRLGSVGVIRAGTIISETWEDG QMLKDLNIHLRQLLETKEAVERQRKSLKKRQSDKGDGTDAESGAQEEDFLIQDEIFKSRLVSIKREEETILRERDRYELEKGRLIRELKRIRDENGSRFN NFQILNHRYALLNLLGKGGFSEVYKAYDLVEHRYVACKLHGLNVQWSEDKKQSYIRHALREYNIHKTLVHNHIVRLWDIFEIDQNTFCTILEYCSGKDLD AVLKATPVLPEREARIIIVQIFQGLVYLNKRAQKIIHYDLKPGNVLFDEFGIAKVTDFGLSKIVEEDVGSQGMELTSQGAGTYWYLPPECFELSKTPLIS SKVDVWSAGVLFYQMLFGRRPFGHDQTQERILREDTIIKARRVEFPTKPTISNEAKDLIRQCLTYNQAERPDVLTIAQDPYLTYLKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20930		TSL	TOUSLED, Protein kinase superf...		Potri.004G193300 [exp]	0	1
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Potri.015G028101 [exp]	4.47	0.9094
AT5G40270			HD domain-containing metal-dep...		Potri.009G147800 [exp]	7.07	0.9205
AT3G14470			NB-ARC domain-containing disea...		Potri.003G200080 [exp]	10.72	0.9058
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Potri.010G122932 [exp]	12.00	0.8969
AT4G18465			RNA helicase family protein (....		Potri.004G052700 [exp]	12.24	0.8857
AT3G14460			LRR and NB-ARC domains-contain...		Potri.017G015000 [exp]	12.72	0.8979
					Potri.015G036450 [exp]	13.19	0.9026
AT3G14610		CYP72A7	"cytochrome P450, family 72, s...		Potri.005G126600 [exp]	13.22	0.9000
AT5G51290			Diacylglycerol kinase family p...		Potri.004G233300 [exp]	15.87	0.8834
					Potri.001G186400 [exp]	17.02	0.8600

Compare expression of checked genes

Potri.004G193300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.