Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04950 280 / 8e-94 ATNAS1 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1, nicotianamine synthase 1 (.1) AT1G09240 279 / 2e-93 ATNAS3 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, nicotianamine synthase 3 (.1) AT1G56430 278 / 4e-93 ATNAS4 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1) AT5G56080 273 / 3e-91 ATNAS2 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 2, nicotianamine synthase 2 (.1) AT4G26483 53 / 3e-09 nicotianamine synthases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143100 [exp] 306 / 9e-105 AT1G09240 362 / 2e-126 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, nicotianamine synthase 3 (.1) Potri.005G014300 [exp] 289 / 2e-97 AT1G09240 405 / 8e-143 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, nicotianamine synthase 3 (.1) Potri.010G143133 [exp] 65 / 8e-13 AT1G56430 76 / 5e-17 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020696 [exp] 284 / 2e-95 AT1G56430 364 / 4e-126 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1) Lus10029843 [exp] 283 / 6e-95 AT1G56430 364 / 2e-126 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1) Lus10031416 [exp] 276 / 9e-93 AT1G56430 340 / 2e-117 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1) Lus10010917 [exp] 268 / 1e-89 AT1G56430 334 / 5e-115 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13847 [poplar] [flax] Methyltransf_31 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.004G193400.1 pacid=42794207 polypeptide=Potri.004G193400.1.p locus=Potri.004G193400 ID=Potri.004G193400.1.v4.1 annot-version=v4.1 ATGGCTGCCCTCCAAATCTCCAACTGCGAGAGCCAAATCTCTACTGAGCTCCTCATAGCTCGGGTAACGCAAATCCATGCTAGCATATCCAAGCTTAGCT CGTTAAGGCCTTCGAAGCAAGTTAATAGCCTCTTCTCTAACCTTGTGAAACTATGTATCCTACCATCATCCATAGACATTACTGCCTTGCCTGAAGAAGT GCAAGCAATGAGAGAAAGCCTCATCAATTTATGTGGCCATGCCGAGGGCCTGTTGGAGCTTGAATTCGCAACGTTCTTGAGCAAAATCCATCAACCTTTG AACAACCTTAACCTTTTTCCCTACTACGGGAACTATGTCAAGCTAGCCAACATTGAATACAGGATCTTGAATGAAAGTGTGGTGCTGCAGCCAAAGAAGG TGGCTTTTGTGGGTTCAGGTCCAATGCCTCTCACTTCTTTTATAATGGCTACACATCATATGAAATTCACTCACTTTGATAATTTTGACATTGATGAGGC TGCTAATGATGTCGCTCGTCAAATTGTTGCTTCTGATGTTGAACTTGAGAAGAGAATGAAGTTTGAGACGGGTGACATAATGGAAGTTAAAGAGAAGCTG AGTGAATATGATTGCATATTCTTGGCTGCCTTGGTTGGCATGAGCAAAGCAGACAAAGTCAAGATTCTAGGCCATATAAGGAAGTACATGAAGGAGGGTG GGGTTCTGCTGGTGAGGAGTGCAAAAGGGGCTAGAGCCTTTCTCTATCCTGTTGTCGAGGAGCAGGATGTTCTTGGCTTTGAGCTTCTCTCCATCTTTCA CCCTACTAATGATGTGATCAATTCAGTTGTTCTCCTCCGCAAGCCTGCCTTTTAA
AA sequence Show only first row Show all	>Potri.004G193400.1 pacid=42794207 polypeptide=Potri.004G193400.1.p locus=Potri.004G193400 ID=Potri.004G193400.1.v4.1 annot-version=v4.1 MAALQISNCESQISTELLIARVTQIHASISKLSSLRPSKQVNSLFSNLVKLCILPSSIDITALPEEVQAMRESLINLCGHAEGLLELEFATFLSKIHQPL NNLNLFPYYGNYVKLANIEYRILNESVVLQPKKVAFVGSGPMPLTSFIMATHHMKFTHFDNFDIDEAANDVARQIVASDVELEKRMKFETGDIMEVKEKL SEYDCIFLAALVGMSKADKVKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEEQDVLGFELLSIFHPTNDVINSVVLLRKPAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04950		ATNAS1	ARABIDOPSIS THALIANA NICOTIANA...		Potri.004G193400 [exp]	0	1
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.005G181000 [exp]	5.09	0.9908
AT3G13610			2-oxoglutarate (2OG) and Fe(II...		Potri.001G006901 [exp]	5.47	0.9906
AT3G12900			2-oxoglutarate (2OG) and Fe(II...		Potri.005G097900 [exp]	7.21	0.9903
AT2G28160	bHLH	ATFIT1, ATBHLH2...	ARABIDOPSIS FE-DEFICIENCY INDU...		Potri.009G005600 [exp]	8.36	0.9822
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134501 [exp]	8.83	0.9703
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Potri.013G049925 [exp]	9.79	0.9840
AT4G19690		ATIRT1, IRT1	ARABIDOPSIS IRON-REGULATED TRA...		Potri.015G117900 [exp]	9.79	0.9882	Pt-ZIP6.4
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.015G006000 [exp]	10.00	0.9860
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.005G181100 [exp]	10.90	0.9881	Pt-NRAMP1.4
AT3G13610			2-oxoglutarate (2OG) and Fe(II...		Potri.001G006800 [exp]	11.22	0.9869

Compare expression of checked genes

Potri.004G193400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.