Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44050 1235 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G19050 634 / 0 POK2 phragmoplast orienting kinesin 2 (.1) AT3G17360 619 / 0 POK1 phragmoplast orienting kinesin 1 (.1) AT3G23670 355 / 8e-105 PAKRP1L ,KINESIN-12B phragmoplast-associated kinesin-related protein, putative (.1.2) AT4G14150 361 / 1e-104 KINESIN-12A, PAKRP1 phragmoplast-associated kinesin-related protein 1 (.1) AT3G10180 238 / 9e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G20150 236 / 2e-63 Kinesin motor family protein (.1) AT3G63480 221 / 2e-62 ATP binding microtubule motor family protein (.1.2) AT3G45850 231 / 4e-62 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 229 / 1e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G156000 [exp] 1980 / 0 AT3G44050 1231 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G145800 [exp] 690 / 0 AT3G19050 1765 / 0.0 phragmoplast orienting kinesin 2 (.1) Potri.002G235500 [exp] 360 / 2e-104 AT3G23670 1399 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Potri.014G149000 [exp] 358 / 7e-104 AT3G23670 1426 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Potri.001G360200 [exp] 281 / 5e-78 AT3G20150 804 / 0.0 Kinesin motor family protein (.1) Potri.002G106000 [exp] 233 / 3e-62 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G040700 [exp] 233 / 4e-62 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G150800 [exp] 232 / 6e-62 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G233700 [exp] 229 / 2e-61 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013377 [exp] 1239 / 0 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008438 [exp] 1206 / 0 AT3G44050 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027934 [exp] 665 / 0 AT3G19050 1521 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10012048 [exp] 658 / 0 AT3G19050 1758 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10018341 [exp] 608 / 0 AT3G19050 1074 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10017113 [exp] 607 / 0 AT3G17360 1085 / 0.0 phragmoplast orienting kinesin 1 (.1) Lus10021969 [exp] 349 / 3e-101 AT3G23670 689 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Lus10016589 [exp] 272 / 7e-75 AT3G20150 914 / 0.0 Kinesin motor family protein (.1) Lus10041262 [exp] 262 / 5e-72 AT3G23670 559 / 8e-180 phragmoplast-associated kinesin-related protein, putative (.1.2) Lus10018120 [exp] 243 / 7e-66 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.004G193700.1 pacid=42794802 polypeptide=Potri.004G193700.1.p locus=Potri.004G193700 ID=Potri.004G193700.1.v4.1 annot-version=v4.1 ATGCCTTTCCTATCGGACACGGCGAGCGCGATTAAGAGCCGGTTCGGGTTTCATGACCGGTCCGTCTCGGAATCTGTGCCGAGCACTCCAGATCTACTGA AATCCGTCTCTCGAGATCATAACCTTGCTTCCGCCCAATCCTTGGTTGCCATGTCAGCAGCCCGGAGGATTGATGACTGGGAGGAGGACGACAACGGTGG CGTTACAGGATCAGTGGTGTCGGTGCCGCGGCATGCTCAGAGCTTTGAGTTCTCCGAGGATCCTTCATTCTGGAAGGAACATAACGTGCAGGTTATTATA AGATTAAGACCGTTAAGCAGTTCAGAAATATCTGTTCAAGGGCATGGCAAGTGCGTTAGGCAAGAAAGTTGTCAGACAATTACTTGGACCGGGCATCCAG AGTCACGGTTTACTTTCGATCTTGTTGCGGATGAAACTGTTAGCCAGGAAAAAATGTTCAAAATGGCTGGATTGCCGATGGTGGACAATTGTATGGGAGG CTACAACAGCTGCATGTTTGCATATGGCCAAACGGGAAGTGGAAAGACTCATACAATGCTTGGAGACATCGAGGGAGGGACTCGAAGACATAGTGTTAAT TGTGGAATGACACCTAGGGTGTTTGAGTATTTGTTCTCAAGAATCCAGAAGGAAAAAGAGGTTCGTAAAGATGAAAAGATAAAATTTACCTGTAAATGCT CTTTCTTGGAAATATACAACGAACAGATTCTTGATCTCCTGGACCCGTCATCTACCAACTTGCAGATAAGAGAAGATGTGAAGAAAGGGGTTTATGTGGA GAATCTCAAGGAGATAGAAGTTGCAAGTGCTCGAGATGTGCTTCATCAACTTATTCAGGGTGCAGCAAATAGAAAAGTAGCAGCCACAAATATGAATCGT GCAAGTAGTCGTTCTCATAGTGTATTTACATGCATCATTGAAAGTAAGTGGGAATCCCAAGGCGTAACTCATCATCGGTTTGCTCAGCTTAATCTTGTTG ATTTAGCAGGATCTGAGAGGCAAAAGAGTTCTGGTGCTGAAGGTGAACGTCTCAAGGAAGCTACCAATATTAACAAGTCACTTTCGACATTGGGACTTGT TATTATGAACCTTGTAAGTATATCAAATGGCAAGTCGCACCATGTTCCTTATCGGGATTCGAAGCTCACATTTTTGCTTCAGGATTCTCTGGGAGGAAAT TCAAAAACCATCATAATTGCAAATATCAGTCCATCTCTTTGTTGCTCTTTGGAGACGTTAAGCACATTGAAATTTGCACAACGAGCAAAATTCATAAAAA ATAATGCAATTGTTAACGAAGATGCATCAGGAGATGTTATTTTGATGCGCCTGCAAATTCAACAACTTAAGAAAGAAGTGTCCCGACTGCGTAGTTTAGT CAATGGGGGAGCTGAAAATCTAGATAGTGATACTTCATCCTTAAGCTTTCTCGGATCTCCTGGAAGTTTTAAGTGGGAAGGGTTTCATGGATCATCTAGT CCGCTTATGTCTGAAAATAGGATGTCTCAGAAGAAAGATTATGAAGTTGCCCTTGTCGGGGCTTTTAGAAGAGAAAAGGATAAGGACATAGCTTTGAAGG CATTGACAGCTGAAAATCAAGCAGTTATGCAACTGACCAAACAGAGAGAGGATGAGATAAAAAGCTTAAAAATGATACTACGATTCCGAGAGGCAGGAGT TAAGAGGCTAGAGGCAGTTTCTGCTGGAAAGATTTCAGCTGAAACACACTTGTTGAAAGAAAAGGAGGAGCATCTGAAGCAAATTGAAGTTTTACGAACC CAGGTTGATCGCAACCAAGAAGTCACAAGATTTGCCACAGAAAATTTGCGTCTAAAGGAAGAAATTAGAAGATTAAAGTCATTTTGTGAGGAAGGTGAAA GGGTGATGATGAATGAACAAATCATGGTCTTACAGAATAAGTTACTAGAAGCACTGGATTGGAAACTTATGCATGAATCAGATTCCTTGGCAGTTCAGAA AACTAGCTTAGACATGGAGACAGCAGCAGTACATGATGATCCACCAATTTTGAGTCAGGAACCAAGATCACCTTGTCAATCTTCAATTAAAGAGGAGAAC GAATTCCTCCGCATACAGGTTATTCAAAACCAGGCCGAAATTGACTTGCTCCTTAAGAAGTTGGATTTCTGTTTTGAAGAGAAGGAAAGACTAGAAAGGC ATGTTAATGATCTCATGATGAAACTTGAAGAAGAGAGATTTTTTAGAGCCACAAACGAGAAAACAGAGCAACTTGAGCTTCCTTTGTCAACTGATGCATC AGTTATCAATGTGGAGCTCAAAACAATGGTTGATGCCATTGCCGCAGCAAGTCAACAAGAAGCTGAAGCTCATGAAAAAGCTATTACATTGTCTACGGAG AATAATGAGCTGCAGTTGAAGCTTGAAACATTTATTGAGGCAAACAAGGAGCTACAGTCAAAACTAAAAGCTTTGATTGAGGAAAAAAATAGTCTCATTG AAATGTATGAACGGGCAGCTTCAAAAAGTAACTACAAGAACGTGAATGATGATGAGAGTGAACAAAATGGCATGGAAGTTCATGATAATGATAGTCCTCC TGAACTTGCCAATGCACGTGAGAGGGAGATGAAAACAGTTGAGAACCTAGAGCAGCAGCTTATGGAAACGCATGAAGAAAATGAAAAGCTGATGGGTTTG TATGAGATAGCTATGCATGAGAGGGATGAACTGAGAAGATTGCTTTCTTCTGATGAACGGAACAGAGTTGGAGAGAAACTAATGGAAGTTGATGGAGAGA AATGTCTTCAGTCTCCTGCATCTCCACTGAACGCGGAGCAAGCTTTCATTGAGTTTGATAAAGTTCTGAGAGAAATTGAAGTAACAGAAGAAGGGCTTCA GATAAAACAGGAAGAGTTTCGATCCCTTGAGCTACTTTCCTCTGAAATGCAAGAGAAAAGAGCTCTTGTAGATAAGAAGTTATCAGCACTGAGATATTCC GTGTCAAGCTTTGTTTCATCAATTGCTTACTTTGAACAGCGAGAACACAGAGCAAAGGCAAGGGTAAATGCTTCAACGTCTTACCTAGAGAAAAAGAAAG AAGAGCTGGCTCGCCTTCAAGTTTGCAAGGAAGAATCTGAGGCCACCATGGGAAGGATTCAACAATCTGAAATTGAATTGAAGAACGTACTGGCAGTTTT GAAATCCAAACTTATGGAGGAGAATCAGAGACAGGAGAGTGAAAAGGTCCTTTTTCCCATAGATAACATTGAGAATGTTGATACCTCACAGAGAAATTGG CAATTAGGCGGTAAAGCTACAGAGTTATTGAAGTCCGAGGAAGAGAAGACCAAGATACAGAATGAAATGAAGCTGTCCCGCGAAAATCTTGGTCTTATAA AGAAAGAATTTGATGTTTTGAGTAAAAAGTTGGGTAAGATAGAGGGTGAAATGCAAGTTGTACAAACGGATATACAGAAGGGATCCAAATCTGTGGAGGA AATGGAACTTGCACTTCAGGCTGTAACCCACGAGAAGGAAACTCTCTTAGAAATCAGAGAGGCTGGAATGCATGAAATTCAGAGTATGATTCTTGAATAT CAGCAAAGCGTCTTCGATGCAGATCTGAAGGGGGCGGAGAAGGAGATGTTGGAAGAAGAATTACAGCTGGAGCTGAGAAGAAATGAAGAGTTGAAAATAC AGCGGGCAGAAGCTTCTGAGAAGATGACCAAGCTGTTGGAAAACACAAGCTCCCGTCCATGCTTTGCTAGAAAAATGGAAGAGTAG
AA sequence Show only first row Show all	>Potri.004G193700.1 pacid=42794802 polypeptide=Potri.004G193700.1.p locus=Potri.004G193700 ID=Potri.004G193700.1.v4.1 annot-version=v4.1 MPFLSDTASAIKSRFGFHDRSVSESVPSTPDLLKSVSRDHNLASAQSLVAMSAARRIDDWEEDDNGGVTGSVVSVPRHAQSFEFSEDPSFWKEHNVQVII RLRPLSSSEISVQGHGKCVRQESCQTITWTGHPESRFTFDLVADETVSQEKMFKMAGLPMVDNCMGGYNSCMFAYGQTGSGKTHTMLGDIEGGTRRHSVN CGMTPRVFEYLFSRIQKEKEVRKDEKIKFTCKCSFLEIYNEQILDLLDPSSTNLQIREDVKKGVYVENLKEIEVASARDVLHQLIQGAANRKVAATNMNR ASSRSHSVFTCIIESKWESQGVTHHRFAQLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSISNGKSHHVPYRDSKLTFLLQDSLGGN SKTIIIANISPSLCCSLETLSTLKFAQRAKFIKNNAIVNEDASGDVILMRLQIQQLKKEVSRLRSLVNGGAENLDSDTSSLSFLGSPGSFKWEGFHGSSS PLMSENRMSQKKDYEVALVGAFRREKDKDIALKALTAENQAVMQLTKQREDEIKSLKMILRFREAGVKRLEAVSAGKISAETHLLKEKEEHLKQIEVLRT QVDRNQEVTRFATENLRLKEEIRRLKSFCEEGERVMMNEQIMVLQNKLLEALDWKLMHESDSLAVQKTSLDMETAAVHDDPPILSQEPRSPCQSSIKEEN EFLRIQVIQNQAEIDLLLKKLDFCFEEKERLERHVNDLMMKLEEERFFRATNEKTEQLELPLSTDASVINVELKTMVDAIAAASQQEAEAHEKAITLSTE NNELQLKLETFIEANKELQSKLKALIEEKNSLIEMYERAASKSNYKNVNDDESEQNGMEVHDNDSPPELANAREREMKTVENLEQQLMETHEENEKLMGL YEIAMHERDELRRLLSSDERNRVGEKLMEVDGEKCLQSPASPLNAEQAFIEFDKVLREIEVTEEGLQIKQEEFRSLELLSSEMQEKRALVDKKLSALRYS VSSFVSSIAYFEQREHRAKARVNASTSYLEKKKEELARLQVCKEESEATMGRIQQSEIELKNVLAVLKSKLMEENQRQESEKVLFPIDNIENVDTSQRNW QLGGKATELLKSEEEKTKIQNEMKLSRENLGLIKKEFDVLSKKLGKIEGEMQVVQTDIQKGSKSVEEMELALQAVTHEKETLLEIREAGMHEIQSMILEY QQSVFDADLKGAEKEMLEEELQLELRRNEELKIQRAEASEKMTKLLENTSSRPCFARKMEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44050			P-loop containing nucleoside t...		Potri.004G193700 [exp]	0	1
AT3G44050			P-loop containing nucleoside t...		Potri.009G156000 [exp]	1.00	0.9845
AT5G60930			P-loop containing nucleoside t...		Potri.002G106000 [exp]	2.00	0.9781
AT3G17360		POK1	phragmoplast orienting kinesin...		Potri.010G153000 [exp]	2.44	0.9630
AT3G19050		POK2	phragmoplast orienting kinesin...		Potri.004G145800 [exp]	3.46	0.9652
AT4G17000			unknown protein		Potri.009G081900 [exp]	5.74	0.9671
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Potri.004G031600 [exp]	5.91	0.9647	Pt-ATK1.1
AT5G56120			unknown protein		Potri.001G470800 [exp]	6.48	0.9594
AT3G27350			unknown protein		Potri.001G336300 [exp]	6.92	0.9591
AT2G20635			ATP binding;protein kinases;pr...		Potri.007G139000 [exp]	8.06	0.9558
AT1G80370		CYCA2;4	Cyclin A2;4 (.1)		Potri.001G177100 [exp]	12.72	0.9569

Compare expression of checked genes

Potri.004G193700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.