Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12230 174 / 2e-54 MED19A unknown protein AT5G19480 169 / 9e-53 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G156200 [exp] 232 / 2e-77 AT5G12230 166 / 2e-51 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017449 [exp] 210 / 7e-69 AT5G12230 207 / 7e-68 unknown protein Lus10008738 [exp] 207 / 2e-67 AT5G12230 191 / 3e-61 unknown protein Lus10028832 [exp] 207 / 2e-67 AT5G12230 201 / 3e-65 unknown protein Lus10002150 [exp] 206 / 3e-67 AT5G12230 202 / 1e-65 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G193800.1 pacid=42796669 polypeptide=Potri.004G193800.1.p locus=Potri.004G193800 ID=Potri.004G193800.1.v4.1 annot-version=v4.1 ATGGATCCAGAAAGCAAGAAGTTTGGAAGAGGACCAAGAGAGCTGACTGGTGCCGTTGATCTTATAAGTCACTTCAAATTGTTGCCCCACCATGAATTTT TCTGCAAGAGGTCACTACCTTTGTCAATTGCAGACACGCATTATCTTCACAATGTGGTGGGAGACACTGAAATAAGAAAAGGAGAAGGGATGCAACTGGA TCAGCTTATCCAGAATACCTCCAGAGATAGTAATGCACACATAGAGCCCTTTGACCTAGATGTACTTAGGGAGGCCTTCCAACTGAAGGAAACTACTCCT ATAGATTTGCCTTCTGCAGAGAAGGGGACTCCTACCATAGCCGGGAAATCAAAAGTTGAGTCCAAGGACAAGGATAGGAAGCATAAAAAACACAAAGAAA GAGATAAGGAGAAGGAGAAGGAGAAGGAGCACAAGAAACGTAAACACCGTCATAAAGATAAAGATCGAAGTAAAGACAAAGACAAGGAGAAGAAGAAGGA TAGAAGTGGACATCATGATTCTGGTGCTGACCATTCCAAAAAACACCACGATAAGAAAAGGAAGCATGATGGAGATGAAGATCTCAATGATGTGCACAAG CACAAAAAAAGTAAGCATAAGAGCTCAAAGATTGATGAAATTGGTGTGATAAAGGTAGCAGGCTGA
AA sequence Show only first row Show all	>Potri.004G193800.1 pacid=42796669 polypeptide=Potri.004G193800.1.p locus=Potri.004G193800 ID=Potri.004G193800.1.v4.1 annot-version=v4.1 MDPESKKFGRGPRELTGAVDLISHFKLLPHHEFFCKRSLPLSIADTHYLHNVVGDTEIRKGEGMQLDQLIQNTSRDSNAHIEPFDLDVLREAFQLKETTP IDLPSAEKGTPTIAGKSKVESKDKDRKHKKHKERDKEKEKEKEHKKRKHRHKDKDRSKDKDKEKKKDRSGHHDSGADHSKKHHDKKRKHDGDEDLNDVHK HKKSKHKSSKIDEIGVIKVAG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12230		MED19A	unknown protein		Potri.004G193800 [exp]	0	1
AT5G46550			DNA-binding bromodomain-contai...		Potri.001G355300 [exp]	2.44	0.8305
AT1G68490			unknown protein		Potri.010G124400 [exp]	2.82	0.8177
AT2G31410			unknown protein		Potri.014G145600 [exp]	3.16	0.7563
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Potri.013G059300 [exp]	4.00	0.7657	GTF901,Pt-TBP1.3
AT1G08710			F-box family protein (.1.2)		Potri.013G067600 [exp]	10.39	0.7775
AT5G58190		ECT10	evolutionarily conserved C-ter...		Potri.006G079900 [exp]	12.24	0.7299
AT5G58340	MYB		myb-like HTH transcriptional r...		Potri.013G154500 [exp]	13.26	0.7337
AT3G48800			Sterile alpha motif (SAM) doma...		Potri.012G104700 [exp]	14.07	0.7500
AT3G04130			Tetratricopeptide repeat (TPR)...		Potri.008G179201 [exp]	22.44	0.7380
AT5G12100			pentatricopeptide (PPR) repeat...		Potri.010G249800 [exp]	31.96	0.6629

Compare expression of checked genes

Potri.004G193800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.