Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03740 572 / 0 ATBPM4 BTB-POZ and MATH domain 4 (.1) AT5G21010 554 / 0 ATBPM5 BTB-POZ and MATH domain 5 (.1) AT3G43700 546 / 0 ATBPM6 BTB-POZ and MATH domain 6 (.1) AT3G06190 436 / 2e-152 ATBPM2 BTB-POZ and MATH domain 2 (.1.2) AT5G19000 425 / 9e-148 ATBPM1 BTB-POZ and MATH domain 1 (.1.2) AT2G39760 424 / 1e-147 ATBPM3 BTB/POZ/MATH-domains containing protein (.1.2) AT5G19330 77 / 3e-15 ARIA ARM repeat protein interacting with ABF2 (.1.2) AT5G13060 70 / 9e-13 ABAP1 ARMADILLO BTB protein 1 (.1) AT1G55760 66 / 1e-11 BTB/POZ domain-containing protein (.1) AT1G21780 56 / 3e-08 BTB/POZ domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G156500 [exp] 735 / 0 AT3G03740 580 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.019G039500 [exp] 615 / 0 AT3G03740 618 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.001G184200 [exp] 452 / 5e-161 AT3G03740 342 / 1e-116 BTB-POZ and MATH domain 4 (.1) Potri.008G059600 [exp] 445 / 1e-155 AT2G39760 549 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Potri.010G199200 [exp] 439 / 2e-153 AT2G39760 528 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Potri.010G029500 [exp] 438 / 4e-153 AT3G06190 580 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.008G200700 [exp] 420 / 8e-146 AT3G06190 582 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.005G210000 [exp] 79 / 9e-16 AT5G19330 977 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.008G150100 [exp] 79 / 1e-15 AT5G19330 1045 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003365 [exp] 653 / 0 AT3G03740 601 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10008421 [exp] 652 / 0 AT3G03740 599 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10040267 [exp] 439 / 2e-153 AT2G39760 597 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Lus10004701 [exp] 439 / 4e-153 AT2G39760 598 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Lus10021946 [exp] 429 / 2e-149 AT3G06190 620 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Lus10041235 [exp] 191 / 2e-58 AT3G06190 339 / 8e-117 BTB-POZ and MATH domain 2 (.1.2) Lus10034070 [exp] 85 / 2e-17 AT5G19330 1092 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10042583 [exp] 85 / 2e-17 AT5G19330 822 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10010527 [exp] 84 / 2e-17 AT5G19330 1103 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10022039 [exp] 84 / 4e-17 AT5G13060 821 / 0.0 ARMADILLO BTB protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0389 [poplar] [flax] TRAF PF00917 [poplar] [flax] MATH MATH domain
Representative CDS sequence Show only first row Show all	>Potri.004G194200.1 pacid=42796125 polypeptide=Potri.004G194200.1.p locus=Potri.004G194200 ID=Potri.004G194200.1.v4.1 annot-version=v4.1 ATGACCGAACCGAACCCACTAGTCTCGCCAACCTCCTCCCGGTCCGTAACCGAAACGGTAAATGGCTCGCACAAGTTCGTAATCCAAGGGTACTCGCTAG CGAAAGGAATGGGAGTAGGCAAGCACATCGCGAGCGATAATTTTACGGTGGGAGGGTATCAATGGGCGATTTACTTTTACCCCGATGGTAAAAATCCGGA GGATAGTTCAGCTCATGTTTCGGTTTTTATCGCGTTGGCTAGCGAAGGGACGGATGTTAGGGCTTTGTTTGAATTGACGCTTGTTGATCAAAGTGGTAAA GGGAAACATAAAGTTCATAGTCATTTTGATCGGTCGCTTGAGAGTGGGCCTTATACGCTCAAGTATCGTGGCAGCATGTGGGGATACAAGCGATTTTTCA GACGGGCAATGCTTGAAACGTCGGATTACCTTAAGGATGATTGCTTGAAAATCAATTGTACTGTTGGAGTAGTGGTTTCTGCAACAGATTGTTCGCAGTT AAACTCAATTCAGGTTCCAGAGTCTGATATAGGAGCTCATTTTGGCATGATGCTCGATAATATGGAAGGTTCAGATGTTATTTTTAATGTGGCAGGGGAA AAATTTCATGCTCATAAGTTGGTGCTGTCTGCCCGATCTCCTTTTTTCCGATCCAAGTTTTTTGATGGCGTAGAGAAAGATGAAAAAGAGATTGTCATTT CTGATCTAGAACCAAAGGTTTTCAAGGCTATGCTGCACTTTGTTTACCGAGATACTCTCACTGAAGATGTGAACATGGTGACGTCCAGCTCATCTCTTGT CTCCTCCATATCTGAAACATTAACAACAAAGTTGTTAGCTGCGGCAGACAGGTATGGTCTGGACAGACTCAAACTGATGTGTGGGTCTCATCTCTGCAAG GATATATCTGTGAACTCTGTTGCCAGCATCCTTACCATGGCTGACTGTCATCATGCAACAGAGTTAAAAGCTGTTTGCCTAAAATTTGCTGCTGAAAACC TTGCAGCTGTAATGCTGTCAGATGGCTTTGCCAACCTCAAGGAGAACTGCCCGTTACTGCAATCAGAGTTACTGAAGACAGTGGCAGGTTGTGAGGAGGA TTGCAGCAGTGGAGGTGGAAAGTCGCGGAGTGTATGGGCCCAACTTTCAGATGGCGGTGACACCAATGGCCGAAGGGTTAGACAAAGAACCTAG
AA sequence Show only first row Show all	>Potri.004G194200.1 pacid=42796125 polypeptide=Potri.004G194200.1.p locus=Potri.004G194200 ID=Potri.004G194200.1.v4.1 annot-version=v4.1 MTEPNPLVSPTSSRSVTETVNGSHKFVIQGYSLAKGMGVGKHIASDNFTVGGYQWAIYFYPDGKNPEDSSAHVSVFIALASEGTDVRALFELTLVDQSGK GKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLETSDYLKDDCLKINCTVGVVVSATDCSQLNSIQVPESDIGAHFGMMLDNMEGSDVIFNVAGE KFHAHKLVLSARSPFFRSKFFDGVEKDEKEIVISDLEPKVFKAMLHFVYRDTLTEDVNMVTSSSSLVSSISETLTTKLLAAADRYGLDRLKLMCGSHLCK DISVNSVASILTMADCHHATELKAVCLKFAAENLAAVMLSDGFANLKENCPLLQSELLKTVAGCEEDCSSGGGKSRSVWAQLSDGGDTNGRRVRQRT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Potri.004G194200 [exp]	0	1
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Potri.010G213300 [exp]	4.00	0.8043
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Potri.009G129700 [exp]	9.27	0.7785
					Potri.001G439825 [exp]	18.54	0.7531
AT5G65540			unknown protein		Potri.007G011800 [exp]	27.20	0.7317
AT2G43190			ribonuclease P family protein ...		Potri.001G033900 [exp]	27.54	0.7061
AT3G14010		CID4	CTC-interacting domain 4 (.1.2...		Potri.003G063000 [exp]	33.57	0.7436
AT5G17440			LUC7 related protein (.1)		Potri.019G055000 [exp]	36.66	0.7004
AT3G08505	C3HZnF		zinc finger (CCCH-type/C3HC4-t...		Potri.001G268200 [exp]	37.30	0.6808
AT3G22170	FAR1_related	FHY3	far-red elongated hypocotyls 3...		Potri.016G018300 [exp]	37.46	0.7462	Pt-FHY3.1
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Potri.010G085500 [exp]	40.29	0.7431	PAFE901

Compare expression of checked genes

Potri.004G194200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.