Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17770 429 / 3e-153 CBR1, ATCBR NADH:cytochrome B5 reductase 1 (.1) AT5G20080 213 / 7e-68 FAD/NAD(P)-binding oxidoreductase (.1) AT1G37130 176 / 7e-50 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT1G77760 167 / 8e-47 GNR1, NIA1 nitrate reductase 1 (.1) AT1G15140 46 / 1e-05 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G157000 [exp] 518 / 0 AT5G17770 421 / 3e-150 NADH:cytochrome B5 reductase 1 (.1) Potri.013G067300 [exp] 433 / 7e-155 AT5G17770 461 / 6e-166 NADH:cytochrome B5 reductase 1 (.1) Potri.010G246800 [exp] 414 / 1e-147 AT5G17770 379 / 1e-133 NADH:cytochrome B5 reductase 1 (.1) Potri.006G218600 [exp] 219 / 6e-70 AT5G20080 511 / 0.0 FAD/NAD(P)-binding oxidoreductase (.1) Potri.005G172400 [exp] 169 / 2e-47 AT1G37130 1400 / 0.0 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) Potri.002G088600 [exp] 168 / 4e-47 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1) Potri.015G068500 [exp] 100 / 2e-26 AT5G17770 104 / 1e-28 NADH:cytochrome B5 reductase 1 (.1) Potri.007G072750 [exp] 45 / 1e-06 AT5G17770 39 / 5e-05 NADH:cytochrome B5 reductase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026774 [exp] 468 / 7e-169 AT5G17770 425 / 1e-151 NADH:cytochrome B5 reductase 1 (.1) Lus10008407 [exp] 456 / 1e-163 AT5G17770 427 / 4e-152 NADH:cytochrome B5 reductase 1 (.1) Lus10020310 [exp] 446 / 5e-160 AT5G17770 474 / 5e-171 NADH:cytochrome B5 reductase 1 (.1) Lus10005682 [exp] 444 / 2e-159 AT5G17770 474 / 6e-171 NADH:cytochrome B5 reductase 1 (.1) Lus10033405 [exp] 402 / 3e-142 AT5G17770 359 / 2e-125 NADH:cytochrome B5 reductase 1 (.1) Lus10034869 [exp] 311 / 1e-106 AT5G17770 280 / 3e-94 NADH:cytochrome B5 reductase 1 (.1) Lus10014491 [exp] 213 / 5e-68 AT5G20080 475 / 1e-170 FAD/NAD(P)-binding oxidoreductase (.1) Lus10030059 [exp] 211 / 6e-67 AT5G20080 516 / 0.0 FAD/NAD(P)-binding oxidoreductase (.1) Lus10038977 [exp] 179 / 6e-51 AT1G77760 1397 / 0.0 nitrate reductase 1 (.1) Lus10027270 [exp] 176 / 8e-50 AT1G77760 1380 / 0.0 nitrate reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0091 [poplar] [flax] NAD_Ferredoxin PF00175 [poplar] [flax] NAD_binding_1 Oxidoreductase NAD-binding domain CL0076 [poplar] [flax] FAD_Lum_binding PF00970 [poplar] [flax] FAD_binding_6 Oxidoreductase FAD-binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G194400.1 pacid=42794801 polypeptide=Potri.004G194400.1.p locus=Potri.004G194400 ID=Potri.004G194400.1.v4.1 annot-version=v4.1 ATGGAAAATTTACAGTCGCATAGGGCTGAAATGATAGGCATAGCTGTGGCTCTTGTTGCCATTGGTGCTAGCACTGCTTTTTATTTCTACATCACCAAGA AACCTAAAGGCTGCTTGGACCCTGAAAATTTTAAGGAATTTAAACTTGTTAAGAGAACCGAACTCAGTCATAATGTGGCTAAGTTTAAATTTGCTCTTCC CAAGCCGAATTCAGTATTGGGACTGCCAATTGGACAACATATGAGTTGCAGAGGAAAGGATAGTGCTGGTGAAGAAGTTATCAAGCCGTATACTCCAACA ACTTTGGATTCTGATCTTGGGTGCTTTGAACTAGTTATAAAGATGTATCCACAAGGTAGAATGTCCCACCACTTCCGTGAAATGCGTGAAGGTGATTACT TGGCTGTTAAGGGGCCTAAGGGGCGCTTCAAGTATCAACCTAACCAAGTCAGAGCTTTTGGAATGATTGCTGGAGGCACTGGAATCACTCCCATGTTCCA AGTTACTAGAGCCATATTAGAAAACCCAAATGACAAAACCAACATACATCTTATTTATGCCAATGTCACATATGAGGACATTCTTTTGAAGGAAGAGATT GATAATCTTGCAACCACTTTTCCTAACCGATTTAAGGTCTACTATGTTTTGAATCAGCCACCAGAAGGATGGGAGGGTGGCATTGGATTCATATCCAAGG AAATGATTCAGTCACACTGCCCCCCACCAGCTGCAGATGTTCAGATATTGAGGTGTGGACCTCCACCAATGAACAAGGCCATGGCATCTAACCTAAATGA TCTTGGATATGCTGCCCAAATGCAGTTCCAATTTTGA
AA sequence Show only first row Show all	>Potri.004G194400.1 pacid=42794801 polypeptide=Potri.004G194400.1.p locus=Potri.004G194400 ID=Potri.004G194400.1.v4.1 annot-version=v4.1 MENLQSHRAEMIGIAVALVAIGASTAFYFYITKKPKGCLDPENFKEFKLVKRTELSHNVAKFKFALPKPNSVLGLPIGQHMSCRGKDSAGEEVIKPYTPT TLDSDLGCFELVIKMYPQGRMSHHFREMREGDYLAVKGPKGRFKYQPNQVRAFGMIAGGTGITPMFQVTRAILENPNDKTNIHLIYANVTYEDILLKEEI DNLATTFPNRFKVYYVLNQPPEGWEGGIGFISKEMIQSHCPPPAADVQILRCGPPPMNKAMASNLNDLGYAAQMQFQF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Potri.004G194400 [exp]	0	1
AT2G24765		ARF3, ARL1, ATA...	ARF-LIKE 1, ADP-ribosylation f...		Potri.006G171500 [exp]	5.47	0.8801
AT2G37975			Yos1-like protein (.1)		Potri.010G194400 [exp]	6.24	0.8340
AT5G19050			alpha/beta-Hydrolases superfam...		Potri.008G202300 [exp]	10.14	0.8853
AT2G25610			ATPase, F0/V0 complex, subunit...		Potri.018G032600 [exp]	12.04	0.8682
AT4G25680			PPPDE putative thiol peptidase...		Potri.017G143132 [exp]	12.40	0.8651
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Potri.004G050800 [exp]	12.96	0.8608	SYP61.1
AT1G32050			SCAMP family protein (.1)		Potri.001G134100 [exp]	12.96	0.8734
AT4G35410			Clathrin adaptor complex small...		Potri.014G079000 [exp]	18.16	0.8837	AP19.1
AT1G49140			Complex I subunit NDUFS6 (.1)		Potri.015G054700 [exp]	20.19	0.8304
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Potri.010G039700 [exp]	26.07	0.8378	Pt-PP2.1

Compare expression of checked genes

Potri.004G194400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.