Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14480 357 / 4e-119 Protein kinase superfamily protein (.1) AT5G14720 276 / 1e-85 Protein kinase superfamily protein (.1) AT1G79640 261 / 6e-80 Protein kinase superfamily protein (.1.2) AT4G10730 255 / 2e-77 Protein kinase superfamily protein (.1) AT4G24100 251 / 6e-76 Protein kinase superfamily protein (.1) AT1G70430 215 / 4e-63 Protein kinase superfamily protein (.1) AT1G23700 209 / 6e-62 Protein kinase superfamily protein (.1) AT1G69220 156 / 7e-41 SIK1 Protein kinase superfamily protein (.1.2) AT1G53165 149 / 7e-39 ATMAP4KALPHA1 ,ATMAP4K ALPHA1 Protein kinase superfamily protein (.1.2.3) AT3G15220 148 / 2e-38 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G049500 [exp] 487 / 3e-169 AT4G14480 368 / 2e-122 Protein kinase superfamily protein (.1) Potri.008G163800 [exp] 446 / 3e-153 AT4G14480 504 / 1e-175 Protein kinase superfamily protein (.1) Potri.001G037900 [exp] 268 / 1e-82 AT1G79640 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G186700 [exp] 268 / 2e-82 AT1G79640 862 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G349300 [exp] 265 / 4e-81 AT5G14720 963 / 0.0 Protein kinase superfamily protein (.1) Potri.003G146000 [exp] 254 / 6e-77 AT4G10730 902 / 0.0 Protein kinase superfamily protein (.1) Potri.001G084700 [exp] 246 / 9e-74 AT4G10730 905 / 0.0 Protein kinase superfamily protein (.1) Potri.010G157400 [exp] 160 / 2e-42 AT1G69220 855 / 0.0 Protein kinase superfamily protein (.1.2) Potri.011G116300 [exp] 152 / 7e-40 AT3G15220 817 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021882 [exp] 339 / 6e-112 AT4G14480 501 / 6e-175 Protein kinase superfamily protein (.1) Lus10014542 [exp] 262 / 1e-79 AT5G14720 895 / 0.0 Protein kinase superfamily protein (.1) Lus10026108 [exp] 255 / 2e-77 AT1G79640 789 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041162 [exp] 242 / 3e-77 AT4G14480 310 / 1e-103 Protein kinase superfamily protein (.1) Lus10000878 [exp] 255 / 4e-77 AT4G24100 887 / 0.0 Protein kinase superfamily protein (.1) Lus10000416 [exp] 254 / 6e-77 AT1G79640 760 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033230 [exp] 254 / 1e-76 AT4G24100 895 / 0.0 Protein kinase superfamily protein (.1) Lus10032144 [exp] 247 / 1e-74 AT5G14720 838 / 0.0 Protein kinase superfamily protein (.1) Lus10001677 [exp] 242 / 4e-71 AT4G10730 892 / 0.0 Protein kinase superfamily protein (.1) Lus10017326 [exp] 241 / 1e-70 AT4G10730 883 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.004G194700.1 pacid=42794288 polypeptide=Potri.004G194700.1.p locus=Potri.004G194700 ID=Potri.004G194700.1.v4.1 annot-version=v4.1 ATGTCAGCTTCATCTTCATCATCCAGGGCTGATGGAAAAGTTCAAATTCAATACCCAACGGGCGCAGATGCATATAGAATCTTGGAACAGATTGGTGGTG GTGCTCGTGCCACAGTTCACAAAGCAACATGTGTCAACAACGACATCCGGTACTCAGGTTTGGTTTCAATCAAGATTATTGATCTTGAACAATATTCTGC AGCCGATCTTGATGGTCTCAGACGTGAATCCAAGGCCATGTCACTTCATTCACACCCTAACTTTCTTGGCTCCCTTTGTTCTTTTACCGTGGATCACCAT CTTTGGCTGGTTATGCCTTACATGGCTGCTGGTTCTCTCCAATCCATAGTCTCTTCTTTTTTCCCTGATGGCCTGCTAGAGCCATGCATTGCTATAGTTC TCAAAGAGACCCTAAAGGGGTTGTCTTATCTTCATCGCCTAGACTATTTACACACAGATATCAAGGCAGGAAACATTCTATTAAATCACACAGATAATGG CAGCATAAAACTTGAAGATTCTGGCATGTCGGTCTGGATTTACGACTCCAACAGCATTGAGAAATCATCCTCATTGTCTTCCTCATCAAAAATGAGGTTA ACTGATGTTGCAGGGACTCCATATTGGATGGCGCCAGAGGTTATACAAGACTCAAATACAGGTTATAGTTTCAAGTCTGATATATGGTCTTTTGGTGTTA CTGCGTTGGAATTGGCCCATGGCGGACCTCCTTTCTCCTACCTTCCTCCTTCGAAGTCTTTGATGTTGAAGATAAAGAAGAGGTTTGGGTTATCTGATTA TGATTACGATGAGAAGAGCAAGAAAGATTTCAAGAACAACCACTTTTCTCAAGCGTTCAAAGATATGGTTGCTTCTTGTCTTGATCAAGACCCTTCAAGG AGACCTTCTGCTGATCAGCTGTTACAGTATTCTTTGTTCAAGAACTGTGAAGGATTGGACCTTTTGTTCAACGAGTTTTTCCGTGGGTTGCCTAATGTTG AAGAAAGATTCAAAGAACCAAACGCTTCAAGTGATGGGACATCAAGCCAGATTACTTCTGGTACTGACACTGACTCAGCGGGTTCAAGTGTGAAGACTAC AAGGATCAGTGGCTGGAAATTTAATGAGAGCAAATTCGAGCTTGAGCCAGAATTTCACGCTGAGTCAAAAGATGATGTTGTGAAAACGGTTCATTTTGGA GGTGAAACCATCATCGATACGGACACCAACATTGGGTTCAGTGAGTCGTCAAGCGGGTCAGGTGACTTGGAGGGTTTAGTGGGAGATCATGCTGGTGCAA ACATGAGTGGAATAGAAGGAGCTGTTGAGACCCTTAATCAAGAGACAGTAGCAGAGAAGGCGAGTAGCAGGTATGATTGTTCTGTTACGACGAGAGTCTG A
AA sequence Show only first row Show all	>Potri.004G194700.1 pacid=42794288 polypeptide=Potri.004G194700.1.p locus=Potri.004G194700 ID=Potri.004G194700.1.v4.1 annot-version=v4.1 MSASSSSSRADGKVQIQYPTGADAYRILEQIGGGARATVHKATCVNNDIRYSGLVSIKIIDLEQYSAADLDGLRRESKAMSLHSHPNFLGSLCSFTVDHH LWLVMPYMAAGSLQSIVSSFFPDGLLEPCIAIVLKETLKGLSYLHRLDYLHTDIKAGNILLNHTDNGSIKLEDSGMSVWIYDSNSIEKSSSLSSSSKMRL TDVAGTPYWMAPEVIQDSNTGYSFKSDIWSFGVTALELAHGGPPFSYLPPSKSLMLKIKKRFGLSDYDYDEKSKKDFKNNHFSQAFKDMVASCLDQDPSR RPSADQLLQYSLFKNCEGLDLLFNEFFRGLPNVEERFKEPNASSDGTSSQITSGTDTDSAGSSVKTTRISGWKFNESKFELEPEFHAESKDDVVKTVHFG GETIIDTDTNIGFSESSSGSGDLEGLVGDHAGANMSGIEGAVETLNQETVAEKASSRYDCSVTTRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14480			Protein kinase superfamily pro...		Potri.004G194700 [exp]	0	1
AT5G24030		SLAH3	SLAC1 homologue 3 (.1)		Potri.015G026801 [exp]	17.26	0.6937
AT1G55790			Domain of unknown function (DU...		Potri.003G101200 [exp]	44.15	0.6379
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Potri.017G125500 [exp]	78.48	0.6051
AT3G26390			unknown protein		Potri.006G180700 [exp]	81.05	0.5662
AT2G45280		ATRAD51C	RAS associated with diabetes p...		Potri.014G068100 [exp]	88.31	0.5985	Pt-RAD51.1
AT5G08780			winged-helix DNA-binding trans...		Potri.005G069700 [exp]	100.37	0.5922
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.013G034300 [exp]	114.91	0.5814
AT2G34930			disease resistance family prot...		Potri.003G196766 [exp]	121.43	0.5884
AT5G08450			unknown protein		Potri.018G136502 [exp]	127.94	0.5787
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.015G139300 [exp]	149.07	0.5857

Compare expression of checked genes

Potri.004G194700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.