Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RGA.63
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 622 / 0 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 487 / 2e-148 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 241 / 4e-66 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G58400 211 / 5e-56 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G07040 209 / 3e-55 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G58807 203 / 4e-53 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59218 201 / 2e-52 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 201 / 2e-52 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT3G46730 199 / 3e-52 NB-ARC domain-containing disease resistance protein (.1) AT3G46530 199 / 3e-52 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G261600 [exp] 1299 / 0 AT3G14470 628 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G261300 [exp] 942 / 0 AT3G14470 538 / 2e-170 NB-ARC domain-containing disease resistance protein (.1) Potri.004G196100 [exp] 880 / 0 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G029300 [exp] 697 / 0 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G015600 [exp] 687 / 0 AT3G14470 591 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.007G137101 [exp] 672 / 0 AT3G14470 616 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G025400 [exp] 660 / 0 AT3G14470 558 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G055600 [exp] 645 / 0 AT3G14470 615 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G015200 [exp] 628 / 0 AT3G14470 559 / 5e-178 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005321 [exp] 1083 / 0 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026132 [exp] 1008 / 0 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 998 / 0 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 667 / 0 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 660 / 0 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 617 / 0 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 593 / 0 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002609 [exp] 383 / 2e-114 AT3G14470 364 / 9e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 379 / 5e-111 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10004126 [exp] 370 / 7e-110 AT3G14470 353 / 6e-106 NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G194800.4 pacid=42793956 polypeptide=Potri.004G194800.4.p locus=Potri.004G194800 ID=Potri.004G194800.4.v4.1 annot-version=v4.1 ATGGAAGTTGTTGGAGAAGTCTTTCTCTCGGCTCTTCTTGAGCCTTTGCTTGGAAAGTTGACCTCTGGAGAACTTCTGAACTTCGTACGCAAAACGCAAG TGGAGAAAGAACTTAACAAGTGGAAGCTAAGACTGTCAGAAATTGATGCAGTTCTTAAGGATGCAGAAGAGAAGCAAATCATAAATTCGACTGTGAAAAT CTGGCTTACCAAGCTCCGAGATTTGGCTTATGATGTGGAGGACGTGCTGGACGAGTTTCAAACAGAAGCTTTGGCAAGCAAGATGAGGGCAGAATCTCAA GCCAGCAGCAGTACTGTCCGGAAGCTCCTCCCAACTTGTTGTGCTGGTCTGAATCCAAGTGCTATTGAGCTTAATATGAGGACGGGGTCCAGGCTGCGGG GCATAACTACACGACTAGAAGCAATTGCTAAAGAGAAAAATGAGCTCGACGTGGGAATCATGGCTGAACAGAGGTCAAAAGGAGTGAAAAAAAGCGCGAC TACATCACTGGTCAAAGAATCCGATGTTTGTGGGAGGGACAATGACAAGAAAGCCATACTTGAATTGTTGATGAACGATGATGCTAGCAACCTTGAGTAC TCCGTCATTCCAATAATTGGAATGGGTGGTATCGGGAAGACAACTCTTACTCAACTTGTCTACAATGATGAGAGAGTGAAGTTTGATTGCAAAGCATGGG TCTGTGTTTCTGATGATTTTGACATTCCGAGGATAACAAAAACAATTCTCCAGCACTTGGAAAGTTGTGAAGATAATGATTTAAATGTTCTTCAAGAAAG ATTGAAGGAAAAATTGTCTGGAAAGAAGTTTTTGATAGTGTTGGATGATGTTTGGAGTAACAACCATGATGATTGGACTGCCCTTTCTCTTCCCTTCAGT GCAGGAGCAAGGGGGAGCAAAGTCATCATCACAACTCGTAGTGAAGACATTGCTTCAAAAATGGGCACTGTTCGTGCTTACACTTTGGAGAGGCTATCAT TTGATGAATGTCTACGCATATTTACCCAACATGCTTTGGATTCCAGAAATTTTGATGCTCATTTGGAATTGAAAGAAATAGGAGAAGAGATGGTGGAAAA ATGTAAAGGATTGCCTTTGATTGCAAAGACACTTGGAGGACTCTTACGCCATAAGCAGAACCTTGAAGGGTGGGAAGACATTTTGAGCAGTGAGATGTGG AATTTGCCAGAAACTGAAAGTGGCATTCTTTCAGCTTTGAGATTAAGCTATAATCATCTTCCTTCCCATTTGAAGCAGTGTTTTGCTTACTGCGCAATCT TTCCTAAAGATTATGAGTTCGAAGAGGGCGAGCTAGTTTCCCTGTGGATGGCAGAAGGTTTTCTGAAGCAAAAAATGAAAAAGAAGCACATGGAAGACTT AGGCCATGAATATTTTCGTGATTTATCATCAAGGTCGTTTTTTCAACGATCTAGTAGCAAGATATCACGATTTATAATGCATGATCTTATAAGTGATCTT GCTCAGTTTGTAAGTGGAGAAATATGCTTCTATTTGGATGACACGAAGAAGGAACCATGCTCAGTAGAATCATATGCTGCAGTTCGCCACTCTTCATTCA CTTCTCATAGATATGACATTTCTCAAAGATTTGATGTCTTCTATGAAATGAAGAACTTGCGAACATTCTTAGCATTGCCAACTTATTTATCACAGTCAAG GCCTTATCACTTATCTAGCAAGGTGTTGGATGATTTAGTGCCAAAATTAAAATGTTTAAGGGCATTGTCACTAGCTGGTTATTCTGTTGAGGAATTGCCA AATTCTACTGGTACCTTAAAGCGTTTACGTTACCTTAACTTGTCCTATACTTGGATTAAAAGATTACCTGAATCGTTGGGTGAACTCTTCAACTTGCAGA CTTTGAGGTTACGTGGGTGCCGGAAGCTTGTTGAGTTGCCCACATGTGTTGTCAATTTAATTAATTTGCAGTGCCTTGATATTAGAGATACAGATGGGTT GCAGGAGATGCCTCTGCAGATAAGCAAATTGATAAATCTTCGCATGCTGCCTAAGTTTATCGTGGGAGAAGGAAAAGGGCTTGGGATAACGGAGTTGATG AAGCTTTCGCATTTACAAGGGCAGCTTAAAATAGAGGGGTTGCATAAGGTGAATATTCGAGATGCAGAACTTGCAAATCTGAAAGAGAAGGCAGGTCTAT GTGACTTATCCTTGCATTGGATTAGTAATTTTGATGATTCACTGCGAAATGAAAGGAATGAACTGCATGTCTTCGACTCATTAAAGCCTCACCGAAGTCT AGAAAAGCTTTCAGTTACATCATATGGCGGTACCGAGTTTCCATCATGGATAGGGGATAGCTGTTTTTCTAAAATTGTGCACCTAAAGCTTTCTACTTGT CGGAAGATCACATCACTTTCATCGGTTGGAAAACTCCCTGCTCTAAGGCATTTGAGCATAGAAGGAATGGATGGGGTGAAAGAAGTGTATGCTGAGGATT TCCAATCTCTTGTGACTTTATACATCAGAAATATGTTGGGGTGGGAGCAGTGGTTGTGGTCTGACGGTGTCAATGAAAGTACTGTGGGAAAATTTCCTAA ACTCAGTGAGCTTACCTTGATGAATTGTCCGAGGTTGATTGGAGATTTGCCAAGTTGCCTTCCTTCCCTCAAAAAGCTTCACGTTGAAAAATGTCAAGGG GTGGTTCTCTCTCTCAGAGCTGCGCCTGATCTAACATCCCTCTCAAGCTTACATTTAATTCAAATTTCCGGCCTTGTAAGGTTACATGAAGAGCTCGTGC AGGCCTTGGTGGCGCTTGAAGATCTTGATCTTATATGTTGTAATGAATTGACGTACTTGTGGCAAGATGGGGTTGATTTAGACAAACTTTCTAGTTTAAA ACGTTTACAGATCGTTGAATGTGAGCAGCTCGTGTCGCTGGTAGAGGGTGAGGAAGGGATTTTGCCTTGCAATCTTGAGGTTTTGACAGTGGAAGACTGT TGTAACTTGGAGAAGCTGGCAAATGGGCTGTGCAGCCTCACATCGCTCAGAGACTTGACAATACTTGCATGCAGAAAACTAGAGTGCTTTTCTGAAGGAG CAGGTTTGCCCCTCTCTCTCAAACGTCTTGTGATTTCAAATTGTGATTCTCTGAGATCGTTGCCCGATGGAATGATGACAATGGTGAACGACAGCGATTG TAACCACTGCCTTCTTGAAGCGCTGTCGGTTACTGCTTGTCCATCCCTAAAATCGCTTCCTAAGGGGAAGTTGCCAAAAACACTCAAGTTCTTGAACATT TCCTGGGATAACCAAGAGTCTCTTCCGGAGGGGATTTTGCAACGTGATGCAAGGGAGACGTCTCGCTCTAATCTTGAGCATTTAATTCTACAGAGTTTAT CTGCCACATCCTTCCCAACTGGCGAGTTTCCTATTTCTCTAAAGGAACTTACTATTGTCAATTGCAGAATACCGTCATTACCACCCCTGCATTTCCTCTT CCATCTCACTGAGTTGGAGATATTTGGGTGCAATGAGTTGAAGTCGTTCCCCAAAGAGGGCTTGCCCCTCCCAAATCTCATCTCTCTTGGAATACACCGT TGTGAAAAGTTGAGGTCCCTACCCGCTCACATGGATAGCCTCAAGTCTCTTCAAGATTTAAGGATATCTAATTGTCACCGTCTGGATTCCTTTATGGAAA GGGGTTTGCCACCTAACCTGACTTCACTTAAAATTCTTAATTGCAAAATTTCACTGCCAATATCTGAGTGGGGACTCCGCTTGCTCACCTCTCTTAAACG ATTCTCAGTCGAATCTACAATGGATGTGGATCGCTTTCCGGATGATGAAGGTCTGCTGCTTCCCCCTTCGTTAACTTTTCTTGAGATCTCTAATCAGGAG ATTCTTAAATCGATATCCAGAGGCCTCCAACACCTCACCTCCCTTGAAGTATTAAACATTTTTGAGTGCCCTATACTCCGGTTCTTCCCCAGGGAGGGCT TCCCTCTCTCACTTGAATGTATACGTATCTGTAGCAGCCCTCTTCTGGAGGAACGATGCTTGAAAGAGAAAGGAGATTATTGGTCCATCATTGCCCACAT CCCCAAAGTTGATATCTCGTAA
AA sequence Show only first row Show all	>Potri.004G194800.4 pacid=42793956 polypeptide=Potri.004G194800.4.p locus=Potri.004G194800 ID=Potri.004G194800.4.v4.1 annot-version=v4.1 MEVVGEVFLSALLEPLLGKLTSGELLNFVRKTQVEKELNKWKLRLSEIDAVLKDAEEKQIINSTVKIWLTKLRDLAYDVEDVLDEFQTEALASKMRAESQ ASSSTVRKLLPTCCAGLNPSAIELNMRTGSRLRGITTRLEAIAKEKNELDVGIMAEQRSKGVKKSATTSLVKESDVCGRDNDKKAILELLMNDDASNLEY SVIPIIGMGGIGKTTLTQLVYNDERVKFDCKAWVCVSDDFDIPRITKTILQHLESCEDNDLNVLQERLKEKLSGKKFLIVLDDVWSNNHDDWTALSLPFS AGARGSKVIITTRSEDIASKMGTVRAYTLERLSFDECLRIFTQHALDSRNFDAHLELKEIGEEMVEKCKGLPLIAKTLGGLLRHKQNLEGWEDILSSEMW NLPETESGILSALRLSYNHLPSHLKQCFAYCAIFPKDYEFEEGELVSLWMAEGFLKQKMKKKHMEDLGHEYFRDLSSRSFFQRSSSKISRFIMHDLISDL AQFVSGEICFYLDDTKKEPCSVESYAAVRHSSFTSHRYDISQRFDVFYEMKNLRTFLALPTYLSQSRPYHLSSKVLDDLVPKLKCLRALSLAGYSVEELP NSTGTLKRLRYLNLSYTWIKRLPESLGELFNLQTLRLRGCRKLVELPTCVVNLINLQCLDIRDTDGLQEMPLQISKLINLRMLPKFIVGEGKGLGITELM KLSHLQGQLKIEGLHKVNIRDAELANLKEKAGLCDLSLHWISNFDDSLRNERNELHVFDSLKPHRSLEKLSVTSYGGTEFPSWIGDSCFSKIVHLKLSTC RKITSLSSVGKLPALRHLSIEGMDGVKEVYAEDFQSLVTLYIRNMLGWEQWLWSDGVNESTVGKFPKLSELTLMNCPRLIGDLPSCLPSLKKLHVEKCQG VVLSLRAAPDLTSLSSLHLIQISGLVRLHEELVQALVALEDLDLICCNELTYLWQDGVDLDKLSSLKRLQIVECEQLVSLVEGEEGILPCNLEVLTVEDC CNLEKLANGLCSLTSLRDLTILACRKLECFSEGAGLPLSLKRLVISNCDSLRSLPDGMMTMVNDSDCNHCLLEALSVTACPSLKSLPKGKLPKTLKFLNI SWDNQESLPEGILQRDARETSRSNLEHLILQSLSATSFPTGEFPISLKELTIVNCRIPSLPPLHFLFHLTELEIFGCNELKSFPKEGLPLPNLISLGIHR CEKLRSLPAHMDSLKSLQDLRISNCHRLDSFMERGLPPNLTSLKILNCKISLPISEWGLRLLTSLKRFSVESTMDVDRFPDDEGLLLPPSLTFLEISNQE ILKSISRGLQHLTSLEVLNIFECPILRFFPREGFPLSLECIRICSSPLLEERCLKEKGDYWSIIAHIPKVDIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.004G194800 [exp]	0	1	RGA.63
AT5G15700			DNA/RNA polymerases superfamil...		Potri.017G105801 [exp]	3.74	0.7823
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014352 [exp]	4.89	0.8114
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.016G064100 [exp]	5.29	0.7962	Pt-UBP12.1
AT5G19420			Regulator of chromosome conden...		Potri.003G197600 [exp]	8.83	0.7424
AT1G61690			phosphoinositide binding (.1)		Potri.004G030500 [exp]	10.95	0.7402
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Potri.008G155000 [exp]	14.42	0.7146	PAFE902
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Potri.010G019150 [exp]	15.16	0.7841
AT1G15200			protein-protein interaction re...		Potri.003G021900 [exp]	18.70	0.6897
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Potri.019G054600 [exp]	21.49	0.7833
AT5G36930			Disease resistance protein (TI...		Potri.001G028750 [exp]	22.64	0.6821

Compare expression of checked genes

Potri.004G194800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.