Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11830 353 / 1e-120 TCP-1/cpn60 chaperonin family protein (.1.2) AT5G20890 78 / 1e-16 TCP-1/cpn60 chaperonin family protein (.1) AT5G26360 72 / 2e-14 TCP-1/cpn60 chaperonin family protein (.1) AT3G20050 67 / 5e-13 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT1G71010 47 / 3e-06 FAB1C FORMS APLOID AND BINUCLEATE CELLS 1C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G195300 [exp] 390 / 3e-135 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.009G157400 [exp] 357 / 4e-122 AT3G11830 929 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.006G128600 [exp] 84 / 6e-19 AT5G20890 904 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.001G341100 [exp] 83 / 2e-18 AT5G20890 944 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.T046300 [exp] 71 / 4e-14 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.018G138200 [exp] 70 / 5e-14 AT5G26360 1029 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.002G142700 [exp] 70 / 5e-14 AT3G20050 994 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.004G133800 [exp] 66 / 2e-12 AT5G26360 1028 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.014G058500 [exp] 62 / 4e-11 AT3G20050 1006 / 0.0 T-complex protein 1 alpha subunit (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008406 [exp] 347 / 2e-118 AT3G11830 1011 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10026773 [exp] 278 / 6e-92 AT3G11830 920 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10014511 [exp] 81 / 2e-17 AT5G20890 916 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10032176 [exp] 81 / 2e-17 AT5G20890 949 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10012380 [exp] 80 / 2e-17 AT5G20890 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10028007 [exp] 79 / 4e-17 AT5G20890 752 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10021150 [exp] 74 / 2e-15 AT5G26360 1046 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10017853 [exp] 74 / 3e-15 AT5G26360 1041 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10034682 [exp] 74 / 3e-15 AT5G26360 1016 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10040514 [exp] 73 / 8e-15 AT5G26360 996 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [poplar] [flax] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Potri.004G195100.1 pacid=42794193 polypeptide=Potri.004G195100.1.p locus=Potri.004G195100 ID=Potri.004G195100.1.v4.1 annot-version=v4.1 ATGGTCGTGGATGCTGTGATTGCAATTGGGAATGATGACAGGCTAAATATGATTGGAATAAAGAAGGTCCCAGGTGGTACTATGCGAGATTCATTTCTGG TTAATGGTGTTGCCTTTCAAAAGACGTTTTCTTATGCGGGGTTTGAACAACAACCAAAGAAGTTTGTGAATCCCAAGATGCTCTTACTCAACATTGAGTT GGAGCTGAAATCTGAGAAAGAAAATGCTGAGATAAGGCTGTCAGATCCATCTCAGTACCAGTCCATTGTTGATGCGGAATGGAATATCATTTATGACAAG TTGGATAAATGTGTGCAAAGTGGGGCAAAAGTGGTTCTTTCACGCCTTGCAATCGGTGATCTGGCAACACAGTATTTTGCTGATCGAGATATATTCTGTG CTGGTCGTGTAAGTGAAGAAGATCTGCAAAGAGTTGCTGCGGCAACTGGTGGAACTGTACAGACAACTGTCAACAACATAATTGATGAGGTTCTTGGGAC TTGTGAGATTTTTGAGGAAAAGCAAGTTGGAAATGAGAGGTTTAATATTTTCAGCGGATGCCCTTCTGGAAGGACAGCCACCATTGTTCTTCGTGGTGGA GCTGACCAGGATGGTAACCGTTGA
AA sequence Show only first row Show all	>Potri.004G195100.1 pacid=42794193 polypeptide=Potri.004G195100.1.p locus=Potri.004G195100 ID=Potri.004G195100.1.v4.1 annot-version=v4.1 MVVDAVIAIGNDDRLNMIGIKKVPGGTMRDSFLVNGVAFQKTFSYAGFEQQPKKFVNPKMLLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDK LDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVSEEDLQRVAAATGGTVQTTVNNIIDEVLGTCEIFEEKQVGNERFNIFSGCPSGRTATIVLRGG ADQDGNR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11830			TCP-1/cpn60 chaperonin family ...		Potri.004G195100 [exp]	0	1
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.010G189100 [exp]	7.68	0.7573
AT4G38760			Protein of unknown function (D...		Potri.004G168700 [exp]	10.67	0.8052
AT5G19690		STT3A	staurosporin and temperature s...		Potri.006G163566 [exp]	11.95	0.7954
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Potri.013G011900 [exp]	25.69	0.7642
AT5G25800			Polynucleotidyl transferase, r...		Potri.002G073300 [exp]	32.86	0.7969
AT1G60770			Tetratricopeptide repeat (TPR)...		Potri.018G079600 [exp]	34.77	0.7932
AT5G65420		CYCD4;1	CYCLIN D4;1 (.1.2.3)		Potri.005G157800 [exp]	39.77	0.7401
AT2G21630			Sec23/Sec24 protein transport ...		Potri.002G238500 [exp]	42.33	0.7592
AT3G18360			VQ motif-containing protein (....		Potri.012G055900 [exp]	47.54	0.7915
AT1G07970			unknown protein		Potri.009G014900 [exp]	47.74	0.7394

Compare expression of checked genes

Potri.004G195100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.