Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11830 985 / 0 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G20050 335 / 2e-108 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT5G20890 304 / 1e-96 TCP-1/cpn60 chaperonin family protein (.1) AT5G26360 290 / 7e-91 TCP-1/cpn60 chaperonin family protein (.1) AT3G18190 280 / 3e-87 TCP-1/cpn60 chaperonin family protein (.1) AT1G24510 252 / 9e-77 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G03960 214 / 3e-62 TCP-1/cpn60 chaperonin family protein (.1) AT3G02530 181 / 4e-50 TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 180 / 1e-49 TCP-1/cpn60 chaperonin family protein (.1) AT3G13470 66 / 3e-11 Cpn60beta2 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G157400 [exp] 1024 / 0 AT3G11830 929 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.004G195100 [exp] 417 / 3e-145 AT3G11830 353 / 6e-121 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.002G142700 [exp] 340 / 4e-110 AT3G20050 994 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.014G058500 [exp] 333 / 1e-107 AT3G20050 1006 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.006G128600 [exp] 313 / 2e-100 AT5G20890 904 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.001G341100 [exp] 312 / 1e-99 AT5G20890 944 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.T046300 [exp] 286 / 2e-89 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.018G138200 [exp] 286 / 2e-89 AT5G26360 1029 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G133800 [exp] 280 / 3e-87 AT5G26360 1028 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008406 [exp] 1000 / 0 AT3G11830 1011 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10026773 [exp] 893 / 0 AT3G11830 920 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10037214 [exp] 330 / 2e-106 AT3G20050 999 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10032467 [exp] 327 / 2e-105 AT3G20050 996 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10042966 [exp] 324 / 5e-104 AT3G20050 991 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10032176 [exp] 310 / 5e-99 AT5G20890 949 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10012380 [exp] 309 / 2e-98 AT5G20890 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10014511 [exp] 304 / 7e-97 AT5G20890 916 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10017853 [exp] 290 / 9e-91 AT5G26360 1041 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10021150 [exp] 290 / 9e-91 AT5G26360 1046 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [poplar] [flax] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Potri.004G195300.2 pacid=42794932 polypeptide=Potri.004G195300.2.p locus=Potri.004G195300 ID=Potri.004G195300.2.v4.1 annot-version=v4.1 ATGGCAGCCATGATGCAACCGCAGATCATACTGCTGAAAGAAGGAACCGACACGTCGCAAGGGAAAGCGCAGTTAGTAAGCAACATAAACGCGTGCACGG CGGTGGCGGATGTAGTGAGGACGACGTTAGGACCTCGTGGTATGGATAAATTGATCCACGACGATAAAGGAAATGTCACCATTTCTAATGACGGCGCCAC GATTATGAAATTGCTCGACATTATTCATCCTGCCTCTAAGATCCTCGTTGATATCGCCAAGTCTCAGGACTCTGAGGTTGGCGATGGAACAACTACTGTA GTTCTACTTGCAGGGGAGTTTTTGAAAGAGGCTAAACCTTTTGTAGAGGAAGGAGTCCACCCACAAAACTTAATACGTAGTTATAGAACTGCATGCAATT TGGCAATTGAGAAGGTCAAAGAACTAGCTGTTAGCATAGAGGGTAAAAGTCTAGAGGAAAAGAAAAGTTTATTGGCTAAATGTGCTGCTACAACACTATC ATCAAAACTTATTGGTGGTGAGAAGGAGTTCTTTGCATCAATGGTCGTGGATGCTGTGATTGCAATTGGGAATGATGACAGGCTAAATATGATTGGAATA AAGAAGGTTCCAGGTGGTACTATGCGAGATTCATTTCTGGTTAATGGTGTTGCCTTTAAAAAGACGTTTTCTTATGCGGGGTTTGAACAACAACCAAAGA AGTTTGTGAATCCCAAGATGCTCTTACTCAACATTGAGTTGGAGCTGAAATCTGAGAAAGAAAATGCTGAGATAAGGCTGTCAGATCCATCTCAGTACCA GTCCATTGTTGATGCGGAATGGAATATCATTTATGACAAGTTGGATAAATGTGTGCAAAGTGGGGCAAAAGTGGTTCTTTCACGCCTTGCAATCGGTGAT CTGGCAACACAGTATTTTGCTGATCGAGATATATTCTGTGCTGGTCGTGTAAGTGAAGAAGATCTGCAAAGAGTTTCTGCGGCATCTGGTGGAACTGTAC AGACAACTGTCAACAACATAATTGATGAGGTTCTTGGGACTTGTGAGATTTTTGAGGAAAAGCAAGTTGGAAATGAGAGGTTTAATATTTTCAGCGGATG CCCTTCTGGAAGGACAGCCACCATTGTTCTTCGTGGTGGAGCTGACCAGTTCATTGAGGAGGCTGAACGGAGTTTACATGACGCAATCATGATAGTCAGA AGAGCTATGAAGAACTCAACTGTTGTTGCTGGTGGTGGTGCTATAGATATGGAAATAAGTCGGTACTTGAGGCAGCATGCTCGCACTATAGCTGGGAAGT CTCAACTGTTTATCAACTCTTATGCAAAAGCCCTTGAGGTTATCCCACGACAACTATGTGATAATGCCGGGTTTGATGCAACTGATGTGCTGAACAAACT AAGGCAGAAACATGCACTTCCATCTGGTGAGGGTGCACCGTATGGAGTGGATATCAACACCGGTGGAATTGCAGATTCATTTTCAAACTTTGTTTGGGAG CCTTCAGTTGTGAAGATCAATGCTATAAATGCTGCTACGGAGGCTGCTTGTCTTATTTTAAGTGTGGATGAGACAGTAAAGAATCCCAAGTCTGAAAGCG CTCAGGGAGAAGCTGCTGCAGGTGCTATGGGTGGACGTGGGGGAGGTGGTTTCCGTGGCCGTGGACGGGGGATGCGAAGACGATGA
AA sequence Show only first row Show all	>Potri.004G195300.2 pacid=42794932 polypeptide=Potri.004G195300.2.p locus=Potri.004G195300 ID=Potri.004G195300.2.v4.1 annot-version=v4.1 MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRTTLGPRGMDKLIHDDKGNVTISNDGATIMKLLDIIHPASKILVDIAKSQDSEVGDGTTTV VLLAGEFLKEAKPFVEEGVHPQNLIRSYRTACNLAIEKVKELAVSIEGKSLEEKKSLLAKCAATTLSSKLIGGEKEFFASMVVDAVIAIGNDDRLNMIGI KKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFVNPKMLLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGD LATQYFADRDIFCAGRVSEEDLQRVSAASGGTVQTTVNNIIDEVLGTCEIFEEKQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVR RAMKNSTVVAGGGAIDMEISRYLRQHARTIAGKSQLFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPSGEGAPYGVDINTGGIADSFSNFVWE PSVVKINAINAATEAACLILSVDETVKNPKSESAQGEAAAGAMGGRGGGGFRGRGRGMRRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11830			TCP-1/cpn60 chaperonin family ...		Potri.004G195300 [exp]	0	1
AT4G32910			unknown protein		Potri.018G044300 [exp]	1.00	0.8661
AT2G01080			Late embryogenesis abundant (L...		Potri.003G021934 [exp]	3.60	0.7648
AT1G15420			unknown protein		Potri.001G173300 [exp]	4.00	0.8283
AT3G09890			Ankyrin repeat family protein ...		Potri.016G097900 [exp]	4.47	0.8161
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Potri.004G235900 [exp]	5.65	0.7871	Pt-ATRLI1.1
AT2G35720		OWL1	ORIENTATION UNDER VERY LOW FLU...		Potri.001G158200 [exp]	6.48	0.7906
AT5G60990			DEA(D/H)-box RNA helicase fami...		Potri.007G068800 [exp]	8.48	0.8025
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Potri.014G043600 [exp]	8.66	0.6788	Pt-ADL4.1
AT3G21540			transducin family protein / WD...		Potri.006G121100 [exp]	9.32	0.8173
AT2G20060			Ribosomal protein L4/L1 family...		Potri.004G004800 [exp]	11.95	0.7737

Compare expression of checked genes

Potri.004G195300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.