Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21140 325 / 2e-108 EMB1379 embryo defective 1379 (.1) AT1G14230 125 / 4e-31 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14240 116 / 5e-28 GDA1/CD39 nucleoside phosphatase family protein (.1.2.3.4) AT1G14250 113 / 7e-27 GDA1/CD39 nucleoside phosphatase family protein (.1) AT2G02970 112 / 3e-26 GDA1/CD39 nucleoside phosphatase family protein (.1) AT4G19180 54 / 2e-07 GDA1/CD39 nucleoside phosphatase family protein (.1) AT5G18280 49 / 7e-06 ATAPY2 apyrase 2 (.1.2) AT3G04080 49 / 7e-06 ATAPY1 apyrase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G157500 [exp] 284 / 1e-89 AT2G02970 330 / 9e-107 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.010G169100 [exp] 114 / 5e-27 AT2G02970 606 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.008G086400 [exp] 112 / 2e-26 AT2G02970 635 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.019G031000 [exp] 63 / 2e-10 AT5G18280 617 / 0.0 apyrase 2 (.1.2) Potri.004G236900 [exp] 62 / 4e-10 AT4G19180 840 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.013G053500 [exp] 62 / 4e-10 AT5G18280 637 / 0.0 apyrase 2 (.1.2) Potri.019G031200 [exp] 51 / 1e-06 AT3G04080 422 / 1e-144 apyrase 1 (.1) Potri.013G053700 [exp] 49 / 3e-06 AT5G18280 300 / 2e-98 apyrase 2 (.1.2) Potri.015G079900 [exp] 46 / 4e-05 AT4G19180 276 / 6e-84 GDA1/CD39 nucleoside phosphatase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019555 [exp] 374 / 2e-127 AT5G21140 326 / 2e-111 embryo defective 1379 (.1) Lus10030470 [exp] 115 / 2e-27 AT2G02970 613 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10012825 [exp] 112 / 4e-26 AT2G02970 605 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10030471 [exp] 89 / 5e-19 AT2G02970 391 / 1e-133 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10006546 [exp] 60 / 2e-09 AT5G18280 647 / 0.0 apyrase 2 (.1.2) Lus10003270 [exp] 59 / 5e-09 AT5G18280 558 / 0.0 apyrase 2 (.1.2) Lus10035695 [exp] 59 / 5e-09 AT4G19180 660 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10034777 [exp] 59 / 8e-09 AT4G19180 879 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10037285 [exp] 59 / 1e-08 AT4G19180 871 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10033317 [exp] 58 / 1e-08 AT4G19180 886 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF01150 [poplar] [flax] GDA1_CD39 GDA1/CD39 (nucleoside phosphatase) family CL0123 [poplar] [flax] HTH PF07574 [poplar] [flax] SMC_Nse1 Nse1 non-SMC component of SMC5-6 complex CL0229 [poplar] [flax] RING PF08746 [poplar] [flax] zf-RING-like RING-like domain
Representative CDS sequence Show only first row Show all	>Potri.004G195600.4 pacid=42793797 polypeptide=Potri.004G195600.4.p locus=Potri.004G195600 ID=Potri.004G195600.4.v4.1 annot-version=v4.1 ATGTCAGTGCTCAATTGGAAGCACCACACTCTCATTCAAGCTCTAATGTCACGCGGGCCACTCACGGAAGACGAATTATTCAACATCTTCGCTGACGTCA CCGGAAAAAACCCGAGAGGTAATAAGAGAGAATTAAATGATTATTTACTGAAGATAAACAAGGAATTGTCGTATGTTCAAATGGAGATGAGGTGTTGTAG AAACCAAAATGATGGTGGAGTGTGTTATGGACTTGTCAATACTGTTCCTGATGAGCAATCGAAGCTCGGAACGAAGTATTCTGTCCCACAGATTGCTTTA TTTAAAGGCGTTATAGAAGCGATAGTGCAGGATGTCACTGCCCAAGGAAGCATATCCAACATTGATGCTCTCAATATACGACTAGAGAATCAGGTCCAGA ATGGGACAGGGTCAGAATATCAGGAAGGTCCATCTCAGATCCCTCCTGCTTTAAGGAACTTCTCCATGTCCCAAAAGGAAAAAACACTTGATGAACTTGT TCGAGACAACTGGCTTTGCCACACACCAGATGGTGCCATTGGACTTGGTGCTAGATCCTACCTTGATTTGCGAAGTTGGTTCAATAGTTCTGGTATACCT TCATGTGAGGTGTGCAATGAAGCTGGAGTAAAGGGAAAAGTGTGTCAAAATGAAGGATGTACAGCTCGAATTCATCATCACTGCCTGGAGAAGAAAATTT CTCATAGCAGGGGTGACATAGTCTGTCCAAGCTGTGGCATTCAATGGCATCGCGGAGTGGCCAAAACTGAGGTCATAGGGGAAGAGGGTGACCTAAATGG GCATATTCAAAGCCAGCTGCCAGCAGGATCCAAAAGGAAGAGGCTGAGAGCCGACACAAATATCCCAGCAGCAGCTTTTGGATGTGTTTCCTCTCAGGGT TCCCAGTCCGGTTCTAGTAGAAGGATTACCCGGGCTTCCGCCCGATTAAAAGAAGAAAGGGGTGTTTATTCCTGGGTTGCTGTTAACTATGTTCATGGAA CCATGGGAAGTGAACCTCACAAAACTACTGGGATGGTTGAGCTTGGTGGCAATTCTTTGCAGATTACATTTGCCTCAAGAGAAGCAGCACAAGTGCAATC TTCACGAAGGATAAAACTGGCTGGAGTTGCTTACAACCTTCAGGCACAAAGCTTACCAAAATTTGGCCAGGACACAGCATGGGAATCACTGCATGAATGG CACAGCTCAAGAGATATGAGCTCATCGTCGGTTTATAGGGATGGATTTGTTGGTAACCCTTGCATTCCCAAAGGATATGAGGTGGCATATAATATAAGTG ACCCAAAGCTTCTGCTGTCTCATGGAGCTGGAAACTTTACTGCATGCAGGCTTGAAGTTTTGGCATTGTTGAAGAGCAGACAAGAGAAATGCTTGCGTCC TCCTTGTAACATTGTCTCCCCTTTTTTCATGGAGCTACAAAGCAAGCCTGTTTCTCAAAACAACGTGTTCTATGCTTCCGAGGGTTTCTTTGTTTGA
AA sequence Show only first row Show all	>Potri.004G195600.4 pacid=42793797 polypeptide=Potri.004G195600.4.p locus=Potri.004G195600 ID=Potri.004G195600.4.v4.1 annot-version=v4.1 MSVLNWKHHTLIQALMSRGPLTEDELFNIFADVTGKNPRGNKRELNDYLLKINKELSYVQMEMRCCRNQNDGGVCYGLVNTVPDEQSKLGTKYSVPQIAL FKGVIEAIVQDVTAQGSISNIDALNIRLENQVQNGTGSEYQEGPSQIPPALRNFSMSQKEKTLDELVRDNWLCHTPDGAIGLGARSYLDLRSWFNSSGIP SCEVCNEAGVKGKVCQNEGCTARIHHHCLEKKISHSRGDIVCPSCGIQWHRGVAKTEVIGEEGDLNGHIQSQLPAGSKRKRLRADTNIPAAAFGCVSSQG SQSGSSRRITRASARLKEERGVYSWVAVNYVHGTMGSEPHKTTGMVELGGNSLQITFASREAAQVQSSRRIKLAGVAYNLQAQSLPKFGQDTAWESLHEW HSSRDMSSSSVYRDGFVGNPCIPKGYEVAYNISDPKLLLSHGAGNFTACRLEVLALLKSRQEKCLRPPCNIVSPFFMELQSKPVSQNNVFYASEGFFV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G21140		EMB1379	embryo defective 1379 (.1)		Potri.004G195600 [exp]	0	1
AT1G69380		RRG	RETARDED ROOT GROWTH, Protein ...		Potri.008G092400 [exp]	7.48	0.7949
AT1G61150			LisH and RanBPM domains contai...		Potri.004G037600 [exp]	15.49	0.8108
AT5G57740		XBAT32	XB3 ortholog 2 in Arabidopsis ...		Potri.018G098400 [exp]	17.54	0.7118
AT3G62190			Chaperone DnaJ-domain superfam...		Potri.002G188300 [exp]	19.49	0.7679
					Potri.004G169000 [exp]	24.73	0.7984
AT1G04960			Protein of unknown function (D...		Potri.014G160800 [exp]	28.98	0.7923
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Potri.019G039500 [exp]	32.61	0.7724
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Potri.012G138600 [exp]	36.05	0.6757
AT4G12790			P-loop containing nucleoside t...		Potri.014G174200 [exp]	37.58	0.6626
AT4G21520			Transducin/WD40 repeat-like su...		Potri.004G034600 [exp]	38.34	0.7557

Compare expression of checked genes

Potri.004G195600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.