Plant FIBer expression Database

Potri.004G195800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G74470 521 / 0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G157700
[exp]
791 / 0 AT1G74470 517 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
Potri.012G068801
[exp]
513 / 2e-180 AT1G74470 774 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008405
[exp]
637 / 0 AT1G74470 536 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
Lus10001642
[exp]
513 / 1e-180 AT1G74470 782 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
Lus10021665
[exp]
513 / 1e-180 AT1G74470 784 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
Lus10026772
[exp]
158 / 5e-47 AT1G74470 126 / 2e-35 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
PFAM info
Representative CDS sequence
>Potri.004G195800.1 pacid=42795524 polypeptide=Potri.004G195800.1.p locus=Potri.004G195800 ID=Potri.004G195800.1.v4.1 annot-version=v4.1
ATGGCTGCATTAACACTAACACACAACCTTCTTTTCGCTCCAACCCCACCTCTCAAAACCCTAAAACCCCACCAAAAACCAAAACCCCACAACCTAACCA
TCACCGCCACCTCCATCTCCGGCCGCAAACTCCGCGCCGCCGTGATCGGCGGTGGCCCAGCTGGTTCCTCCGCCGCAGAAGCATTAGCAGCAGGCGGAGT
GGAAACTTTCCTCTTCGAACGCAGCCCTTCCACAGCTAAGCCATGTGGTGGGGCTATCCCTCTCTGTATGATCGACGAGTTTTCCATCCCTCTTCACCTC
GTCGACCGACATGTCACTCGCATGAAGATCATCTCTCCTTCGAATCTGACCGTTGATTTCGGTTCCAGGACTTTAAAGTCTCACGAGTTTATCCCCATGT
TGCGCCGCGAAGTACTGGATTCTTTTCTCCGATCTCGCGCTCAATCCAACGGTGCCCATTTTATCACTGGCCTCGTAACGGATATTGAGGTGCCTGATTT
TTTTTCTTCCAAACCTTATGTTATCCACCACACGATTAATAATCGTAAACAATCGTTAGCCGTTGATTTGATTGTTGGTGCTGATGGAGCCAATAGCAGG
GTAGCGAAGATTATTGATGCTGGGAACTACAGTTGTGCCATTGCGTTCCAGGAGAGAATCAAATTGCCGGATGAGAAAATGGAGTATTATCATGATCTCG
CGGAAATGTATGTCGGGAATGACGTGTCGCCTGATTTTTATGCGTGGGTGTTTCCAAAATGTGACCACGTGGCGGTGGGGACAGGTACGGTGTGTGCGAG
GCAGAATATTAAGGTGTATCAAAGAGGGATTAGGGAGAGGGTCAGGGAGAAGATTAAGGGTGGGAAAGTGATTAAAGTGGAGGCGCACCCGATCCCCGAG
CACCCACGTCCGAGGCGCGTGCGTGGACGTGTGGCGCTTGTAGGGGATGCGGCGGGGTATGTGACCAAGTGTTCAGGAGAAGGGATATATTTTGCGGCGA
AATCAGGGAGAATGTGTGGGGAGGCTATTGTGAAGGCTTCGGAAGGAGGGGAGAAAATGATTAGTGAGGAGGACTTGAAGAGGGAGTACTTGAGAGAATG
GGACAGGAAGTATGTGAATACATTTAGGTTTCTGGATCTGTTGCAAAAAGTGTTTTATGGGAGTGATGTGGGCAGAGAAGCCTTGGTGGAGTTATGTGGG
GATGAGTATGTGCAGAGGATGACATTTGATAGTTACTTGTATAAAAAGTTGGCTACTGGAGATAGATGGGGTGATGTGAAATTGGTTTTGAATACTTTTG
GGAGTTTGATGAGATGTAAGGTTTTAGGAAGGGAGATGGAGGCTTTGAAGTTGTAA
AA sequence
>Potri.004G195800.1 pacid=42795524 polypeptide=Potri.004G195800.1.p locus=Potri.004G195800 ID=Potri.004G195800.1.v4.1 annot-version=v4.1
MAALTLTHNLLFAPTPPLKTLKPHQKPKPHNLTITATSISGRKLRAAVIGGGPAGSSAAEALAAGGVETFLFERSPSTAKPCGGAIPLCMIDEFSIPLHL
VDRHVTRMKIISPSNLTVDFGSRTLKSHEFIPMLRREVLDSFLRSRAQSNGAHFITGLVTDIEVPDFFSSKPYVIHHTINNRKQSLAVDLIVGADGANSR
VAKIIDAGNYSCAIAFQERIKLPDEKMEYYHDLAEMYVGNDVSPDFYAWVFPKCDHVAVGTGTVCARQNIKVYQRGIRERVREKIKGGKVIKVEAHPIPE
HPRPRRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCGEAIVKASEGGEKMISEEDLKREYLREWDRKYVNTFRFLDLLQKVFYGSDVGREALVELCG
DEYVQRMTFDSYLYKKLATGDRWGDVKLVLNTFGSLMRCKVLGREMEALKL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G74470 Pyridine nucleotide-disulphide... Potri.004G195800
[exp]
0 1
AT5G23960 ATTPS21 terpene synthase 21 (.1.2) Potri.019G045400
[exp]
4.89 0.7220
AT1G62510 Bifunctional inhibitor/lipid-t... Potri.003G111400
[exp]
7.34 0.7144
AT2G01570 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSO... Potri.010G110700
[exp]
12.64 0.7222 GAI.1
AT2G01080 Late embryogenesis abundant (L... Potri.001G208000
[exp]
19.18 0.7089
AT2G23210 UDP-Glycosyltransferase superf... Potri.009G095550
[exp]
22.58 0.7036
AT2G23060 Acyl-CoA N-acyltransferases (N... Potri.005G146100
[exp]
25.23 0.6917 HLS1.1
AT4G35900 bZIP ATBZIP14, FD-1,... Basic-leucine zipper (bZIP) tr... Potri.002G018400
[exp]
33.76 0.6953
AT5G41620 unknown protein Potri.002G166600
[exp]
35.56 0.6942
AT5G13660 unknown protein Potri.008G051300
[exp]
41.66 0.7019
AT3G29320 PHS1 alpha-glucan phosphorylase 1, ... Potri.004G123600
[exp]
42.03 0.6586 PHO1.2

Potri.004G195800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.