Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21050 326 / 1e-110 unknown protein AT5G64090 200 / 2e-60 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G158000 [exp] 473 / 4e-168 AT5G21050 380 / 2e-131 unknown protein Potri.001G209800 [exp] 198 / 5e-60 AT5G64090 333 / 4e-111 unknown protein Potri.003G020500 [exp] 193 / 4e-58 AT5G64090 350 / 1e-117 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001150 [exp] 322 / 2e-109 AT5G21050 348 / 2e-119 unknown protein Lus10020420 [exp] 203 / 1e-59 AT5G64090 453 / 6e-154 unknown protein Lus10019547 [exp] 103 / 4e-27 AT5G21050 100 / 1e-26 unknown protein Lus10015829 [exp] 90 / 4e-21 AT5G64090 146 / 6e-42 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09790 [poplar] [flax] Hyccin Hyccin
Representative CDS sequence Show only first row Show all	>Potri.004G195900.2 pacid=42796410 polypeptide=Potri.004G195902.1.p locus=Potri.004G195900 ID=Potri.004G195900.2.v4.1 annot-version=v4.1 ATGTCAGAAGATAGCTCCTCTTCTGAAGAAACCAATTATAGCCCTACCACATCCATATCACAAGACACGTTCACCACTGAGACCACCACCATCACAGCCT TCAATGTCCCCCCCGAGACCTTTCCCTCCTCCTCTAGTACTCATTTAGCCATTCAATCCCTTTCTTCCATTCTAACCACATTGCCTCCTCCTCTCCTTTC CTCTCAAGATCAAGACCCTGCCTTCTCCCTCCTCCACGACCCTGATATCTCCTCTCAAGTCTCATCCCTCCTCCGTCTCCCCGACTCCGGTGCAGGTGAC AACAGTCTCTGCCGTTGGTTCTATGACACCTTCCAATCCTCAGAGCCCCAACTCCAGCTTGTTGTCTTACGTTTCCTTCCTATCATTGCTGGCCTTTATC TATCCCGTGTTGCCCTAAAAAAACCCTTGGCTGGTTTTGAGGCAGTTTTGTTAGCCCTTTATGCGCATGAAACCACCTCACGAGCAGGCCATCCTGCAAA GGATAATAAGGCTGCAGAATTAAACCTAGCTGTGATATCTCCAAGTTTGGAGCCTCATGGGACGGTGAGATCAACAAAAAGGGCAAGAATTGTCGGGGTT GCATTAGAGTTATATTATAGTAAGATCTCTCTGATGCCCGTGGGGTCTAAGATTGAATTTTTTGAATTTTTTAAGGTTTGGTCTGGTCAAGATGATGATG CGGGTAGAGACTGTGAGACTCGGGATGATCAAGAAAATGTTGGCAAAGAGAGTGTTACTAAGGAAGGGAGGATTCCTTTGCCATGCGAGATCTTGCAACC TGTTTTGAGGATATTAGGGCATTGCCTTTTGGGTCCTAAAAAAGACAAAGAATTGATTGGGGCAGCTTGTGCAGCATGTAGAAGTTTGTATTCAAGGTCT TTGCATGATATCAATCCTCAGGCAATTTTAGCTACTAGGAGCCTTCTTAGGCTAAGTGAGAAGACCTGGGATCCAAAGAATAATGTTGATCATACTGAGA TACCAATGAATAATGTTATCGCGCTCTAA
AA sequence Show only first row Show all	>Potri.004G195900.2 pacid=42796410 polypeptide=Potri.004G195902.1.p locus=Potri.004G195900 ID=Potri.004G195900.2.v4.1 annot-version=v4.1 MSEDSSSSEETNYSPTTSISQDTFTTETTTITAFNVPPETFPSSSSTHLAIQSLSSILTTLPPPLLSSQDQDPAFSLLHDPDISSQVSSLLRLPDSGAGD NSLCRWFYDTFQSSEPQLQLVVLRFLPIIAGLYLSRVALKKPLAGFEAVLLALYAHETTSRAGHPAKDNKAAELNLAVISPSLEPHGTVRSTKRARIVGV ALELYYSKISLMPVGSKIEFFEFFKVWSGQDDDAGRDCETRDDQENVGKESVTKEGRIPLPCEILQPVLRILGHCLLGPKKDKELIGAACAACRSLYSRS LHDINPQAILATRSLLRLSEKTWDPKNNVDHTEIPMNNVIAL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G21050			unknown protein		Potri.004G195900 [exp]	0	1
AT4G08025			Protein of unknown function (D...		Potri.004G110300 [exp]	1.00	1.0000
					Potri.014G065250 [exp]	2.00	1.0000
					Potri.004G208200 [exp]	4.47	0.6534
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Potri.010G182900 [exp]	6.32	0.5722
AT1G29510		SAUR68	SMALL AUXIN UPREGULATED 68, SA...		Potri.005G196850 [exp]	13.63	0.6070
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Potri.006G196500 [exp]	17.86	0.5337	MS2.1
					Potri.017G041400 [exp]	32.55	0.6114
AT1G74500	bHLH	TMO7, PRE3, ATB...	TARGET OF MONOPTEROS 7, activa...		Potri.012G069500 [exp]	40.89	0.4674
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Potri.005G222401 [exp]	90.33	0.3566
AT1G43760			DNAse I-like superfamily prote...		Potri.012G064001 [exp]	96.44	0.3546

Compare expression of checked genes

Potri.004G195900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.