Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21060 509 / 0 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1.2.3) AT1G31230 151 / 6e-40 AK-HSDHI ,AK-HSDH I aspartate kinase-homoserine dehydrogenase i (.1) AT4G19710 149 / 4e-39 AK-HSDHII, AK-HSDH ,AK-HSDH II aspartate kinase-homoserine dehydrogenase ii (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G071700 [exp] 159 / 6e-43 AT4G19710 1470 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Potri.013G099500 [exp] 159 / 1e-42 AT4G19710 1425 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034077 [exp] 559 / 0 AT5G21060 561 / 0.0 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1.2.3) Lus10003073 [exp] 556 / 0 AT5G21060 553 / 0.0 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1.2.3) Lus10041071 [exp] 143 / 3e-37 AT4G19710 1373 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Lus10030339 [exp] 135 / 1e-34 AT4G19710 1415 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0139 [poplar] [flax] GADPH_aa-bio_dh PF00742 [poplar] [flax] Homoserine_dh Homoserine dehydrogenase CL0063 [poplar] [flax] NADP_Rossmann PF03447 [poplar] [flax] NAD_binding_3 Homoserine dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G196200.1 pacid=42794603 polypeptide=Potri.004G196200.1.p locus=Potri.004G196200 ID=Potri.004G196200.1.v4.1 annot-version=v4.1 ATGAAGAATATACCTCTGCTTTTGATGGGTTGTGGGGGCGTTGGTCGCCAACTCCTCCAACACATCGTGTCCTGCCGATCCCTCCATGCCCAACAGGGTG TTCATTTGAGAGTAGTTGGAGTTTGTGACAGTAAATCGTTAGTTTTTGCATCTGACGTGATTACTAGAGAGTTAAATGATCAAACTTTATCGGAAGTTTG CCGGTTTAAGTCGAATGGTTCATCTCTTTCAGCTCTAGGTGATCTGGGTGAATGCATAGTAAATGGGAATACGGAATCCAAGAGGAAAGTTATGGACATT GCAGCTCTTCTCGGGAAGGCAACAGGTTTGGCTTTTGTGGATTGTTCTGCAAGTTCTGAGACTATTAGAATGCTAAATCAAGTTGTTGATATGGGATGCT GCGTTGTTCTGGCAAATAAGAAGCCTCTTACTTCTACAATGGAAGATTATGACAAATTGGTCTCTTATCCACGTCGTATCCGGCACGAGTCAACTGTCGG TGCTGGCCTTCCTGTCATAGCATCCTTAAATCGATTACTTTCATCAGGAGACCCTGTCCATCGTATTATTGGGAGTTTGAGCGGTACATTGGGATATGTT ATGAGCGAGGTTGAGGATGGAAAGCCATTTAGTGAAGTTGTTAAAGTTGCTAAAAATCTTGGATTCACTGAACCAGATCCACGTGATGACCTCAGTGGGA TGGATGTTGCAAGGAAGGCTTTGATTCTGGCTCGACTTCTTGGGAGAAGGATTAACTTGGATAGCATTAAAATTGAGAGTTTATACCCTGATGAAATGGG ACCTGATGCAATGTCTGTTGAGGAATTTTTGGGTAGTGGTATTGTATCACTTGACAATGATGTTCAAGAAAGAGTTAAAAGGGCTTCGTTGAATGGCAAC GTGCTTCGTTATGTCTGTGTAATTGAAGGATCAAGCAGGTGTGAAGTTGGCATTCAAGAGCTACCCAAGGATTCTCCTTTGGGTAGATTGAGGGGCAGTG ACAATGTGTTGGAGATATACAGCCGATGTTACAACAAACAACCTTTGGTTATTCAAGGCGCTGGAGCTGGCAATGATACCACAGCAGCTGGTGTGCTTGC TGATATCCTGGATATTCAGGATTTATTTCCTTGA
AA sequence Show only first row Show all	>Potri.004G196200.1 pacid=42794603 polypeptide=Potri.004G196200.1.p locus=Potri.004G196200 ID=Potri.004G196200.1.v4.1 annot-version=v4.1 MKNIPLLLMGCGGVGRQLLQHIVSCRSLHAQQGVHLRVVGVCDSKSLVFASDVITRELNDQTLSEVCRFKSNGSSLSALGDLGECIVNGNTESKRKVMDI AALLGKATGLAFVDCSASSETIRMLNQVVDMGCCVVLANKKPLTSTMEDYDKLVSYPRRIRHESTVGAGLPVIASLNRLLSSGDPVHRIIGSLSGTLGYV MSEVEDGKPFSEVVKVAKNLGFTEPDPRDDLSGMDVARKALILARLLGRRINLDSIKIESLYPDEMGPDAMSVEEFLGSGIVSLDNDVQERVKRASLNGN VLRYVCVIEGSSRCEVGIQELPKDSPLGRLRGSDNVLEIYSRCYNKQPLVIQGAGAGNDTTAAGVLADILDIQDLFP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G21060			Glyceraldehyde-3-phosphate deh...		Potri.004G196200 [exp]	0	1
AT1G61570		TIM13	translocase of the inner mitoc...		Potri.001G452100 [exp]	6.08	0.8381	TIM13.1
AT4G39880			Ribosomal protein L23/L15e fam...		Potri.005G075500 [exp]	14.96	0.7911
AT3G58680		MBF1B, ATMBF1B	multiprotein bridging factor 1...		Potri.001G390400 [exp]	17.05	0.7311
AT2G42810		AtPP5, PP5.2, P...	Arabidopsis thaliana protein p...		Potri.014G141800 [exp]	17.14	0.7648
AT1G77750			Ribosomal protein S13/S18 fami...		Potri.002G088400 [exp]	20.59	0.8172
AT4G31810			ATP-dependent caseinolytic (Cl...		Potri.018G018800 [exp]	21.16	0.7955
AT5G59850			Ribosomal protein S8 family pr...		Potri.001G118100 [exp]	21.35	0.8281	Pt-WRP15.2
AT5G11880			Pyridoxal-dependent decarboxyl...		Potri.004G157500 [exp]	21.70	0.8273
AT4G00026		SD3	SEGREGATION DISTORTION 3, unkn...		Potri.014G054400 [exp]	24.41	0.7126
AT3G56070		ROC2	rotamase cyclophilin 2 (.1.2)		Potri.019G014396 [exp]	24.55	0.8105

Compare expression of checked genes

Potri.004G196200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.