Plant FIBer expression Database

Potri.004G196400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G27100 761 / 0 C2H2ZnF SE C2H2 zinc-finger protein SERRATE (SE) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G158600
[exp]
969 / 0 AT2G27100 742 / 0.0 C2H2 zinc-finger protein SERRATE (SE) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026766
[exp]
825 / 0 AT2G27100 835 / 0.0 C2H2 zinc-finger protein SERRATE (SE) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0361 C2H2-zf PF04959 ARS2 Arsenite-resistance protein 2
CL0361 PF12066 SERRATE_Ars2_N SERRATE/Ars2, N-terminal domain
Representative CDS sequence
>Potri.004G196400.2 pacid=42794608 polypeptide=Potri.004G196400.2.p locus=Potri.004G196400 ID=Potri.004G196400.2.v4.1 annot-version=v4.1
ATGGCTGAAGTCATTAACATGCCGGTCGATTCCCTTGACCGTCGCGGCGGGAGTGGTGGCGGAGGAGGAGGACGCGACAGGAAGGATAAACCAAACACCG
ACGATCAATCATCTCCTCCACCACCTCCTCAGCCTCAACGACGCCGTGAGAGAGACTCAAGAGAGAGACGCGAAGACTTCGATAGACCATTGAATCGACG
CGGAGGCGACTACCACGATAGGAATCGGTCTCCGCCACCTCCGCAACGAGAGAGGGAAAAAGAGTATAAGAGGAGGAGTAGTACGAGTCCTCCACCACCA
TTGCCGTATAGAGATAGGAGACATTCGCCGCCGCCGAGGAGGTCGCCTCCGTATAAACGGTCGAGGAGGGAGGATGGTGGGTTTGATGCTAGGAGAGGAA
GTCCTAGAGGTGGATTTGGAGGTGGTGATCGAAGGTTTGGATATGATTATGGTGGTGGATACGAGCGTGAGATGGGAGGGAGGCCAGGGTATGGTGAAGA
AAGGCCTCATGGCCGATACATGGGTCGTGGAGGTGGGTATCAAGGTGGTCCTTCAGATTGGGAATCGGGGCGTGGTGGTCATGGTGATGCTTCCAACACC
GTGTCTGCTCAAAGAGAGGGCTTGATGTCATACAAGCAATTCATCCAGGAGCTTGAAGATGATATACTGCCATCTGAAGCTGAGCGCAGATATCAAGAAT
ACAAGTCAGAGTATATTTCAACTCAGAAACGGGTTTTCTTTGAGGCTCATAAAGACGAGGAATGGTTGAAAGACAAGTATCATCCAACCAATTTGGTTGC
AGTCATTGAAAGGAGGAATGAACTTGCACGGAAGGTTGCAAAAGATTTTTTGCTGGATTTGCAGAGTGGAACATTGGACTTAGGTCCTGGTGTGAATGCA
TCATCGTCAAATAAATCAGGGCAGGCAAGTGATCTAAATTCTGATGATGAGGCAGAGGCTGGTGGCAAAAGGAGGAGGCACGGTCGGCCACCAGCTAAAG
ACGCTGATCTTCTTTCAGCTGCTCCAAAGGCTCATCCAGTGAGTTCTGAACCCAAGAGAATCCAAGTTGACATTGAACAAGCACAGGCCCTTGTATGCAA
ACTTGACTCTGAAAAAGGTGTTGAAGACAATATTCTAAGTGGGTCTGATAATGAAAAAATGAGTAGAGAGAAATCCCATGGGAGCTCCACTGGCCCAGTT
ATCATCATACGCGGCTTAACCTCAGTCAAGGGCCTTGAAGGTGTTGAACTACTGGATACGCTTATAACCTATCTGTGGCGAGTCCATGGTTTGGATTATT
ATGGAATGATTGAAACAAATGAAGCTAGGGGTCTTAGGCACGTGAGAACTGAGGGAAAGAGTTCTGATTCAAGCAACAGTGGAACTGAATGGGAAAAGAA
ACTTGACTTGCGCTGGCAAGAGAGATTGAGGGGTCAAGATCCTCTAGAAGAAATGACTGCTAAGGAGAAGATAGATGCCGCTGCAGTTGAAGGTTTGGAT
CCATATGTCCGGAAGATTAGAGATGAAAAGTATGGGTGGAAGTATGGTTGTGGAGCCAAGGGTTGCACAAAGCTCTTCCATGCTTCTGAGTTTGTGCAAA
AGCATCTCAAGCTGAAACACCCTGAACTTGTGATCGACCTGACTGCCAAAGTGCGGGAAGAGCTGTATTTTCAGAACTATTTGAATGATCCAGATGCACC
TGGTGGCACACCTGTTATGCAGCAGTCATTACCGAAGGATAAGCCACAAAGGCGCAAGCTTGGTCCAGAAAATCGATTGAAGGATGAACGTGGCAACCGT
AGAGAACGTGAGAATAGAGCAAATGGCAACGAAAGATTTGATAGGTCTGAAAATCCACAGTCAGGTGACTTCCAATCTAATGATGGTCCTGATGGAGGAA
ATTGTGATGAAACAATGTTTGATACTTTCGGAGGACAAGGCATCCGTGTACCTCCTCCTTTCCCCTCAGATATAGCTCCTCCACCAGTTTTGATGCCTGT
TCCCGGAGCTGGTCCACTGGGGCCTTTTGTTCCTGCCCCACCTGAAGTGGCAATGCGCATGTTTAGAGATCAGGGTGGTCCTCCTCCATTTGAAAGTGGA
GGTAGAAATGCAAGGCCTGGGCCCCAGTTAGGTGGGCCAGCCCCTATTCTTCTATCACCAGCCTTCCGACAGGATCCCCGACGTATACGCAGCTATCAAG
ACCTAGATGTGCCAGAGGATGAAGTCACTGTTATAGATTACAGGAGTTTGTAG
AA sequence
>Potri.004G196400.2 pacid=42794608 polypeptide=Potri.004G196400.2.p locus=Potri.004G196400 ID=Potri.004G196400.2.v4.1 annot-version=v4.1
MAEVINMPVDSLDRRGGSGGGGGGRDRKDKPNTDDQSSPPPPPQPQRRRERDSRERREDFDRPLNRRGGDYHDRNRSPPPPQREREKEYKRRSSTSPPPP
LPYRDRRHSPPPRRSPPYKRSRREDGGFDARRGSPRGGFGGGDRRFGYDYGGGYEREMGGRPGYGEERPHGRYMGRGGGYQGGPSDWESGRGGHGDASNT
VSAQREGLMSYKQFIQELEDDILPSEAERRYQEYKSEYISTQKRVFFEAHKDEEWLKDKYHPTNLVAVIERRNELARKVAKDFLLDLQSGTLDLGPGVNA
SSSNKSGQASDLNSDDEAEAGGKRRRHGRPPAKDADLLSAAPKAHPVSSEPKRIQVDIEQAQALVCKLDSEKGVEDNILSGSDNEKMSREKSHGSSTGPV
IIIRGLTSVKGLEGVELLDTLITYLWRVHGLDYYGMIETNEARGLRHVRTEGKSSDSSNSGTEWEKKLDLRWQERLRGQDPLEEMTAKEKIDAAAVEGLD
PYVRKIRDEKYGWKYGCGAKGCTKLFHASEFVQKHLKLKHPELVIDLTAKVREELYFQNYLNDPDAPGGTPVMQQSLPKDKPQRRKLGPENRLKDERGNR
RERENRANGNERFDRSENPQSGDFQSNDGPDGGNCDETMFDTFGGQGIRVPPPFPSDIAPPPVLMPVPGAGPLGPFVPAPPEVAMRMFRDQGGPPPFESG
GRNARPGPQLGGPAPILLSPAFRQDPRRIRSYQDLDVPEDEVTVIDYRSL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G27100 C2H2ZnF SE C2H2 zinc-finger protein SERRA... Potri.004G196400
[exp]
0 1
AT3G52250 MYB Duplicated homeodomain-like su... Potri.008G041900
[exp]
1.73 0.9270
AT2G22010 RKP related to KPC1 (.1.2) Potri.005G083800
[exp]
2.44 0.9079
AT1G06230 GTE4 global transcription factor gr... Potri.013G118900
[exp]
2.44 0.9257
AT2G27100 C2H2ZnF SE C2H2 zinc-finger protein SERRA... Potri.009G158600
[exp]
3.00 0.8946
AT2G36480 ENTH/VHS family protein (.1.2.... Potri.006G115600
[exp]
4.00 0.9160
AT5G27650 Tudor/PWWP/MBT superfamily pro... Potri.005G026800
[exp]
4.58 0.9174
AT1G67580 CDKG;2 Protein kinase superfamily pro... Potri.008G178200
[exp]
6.92 0.8960
AT3G55560 AT-hook AHL15, AGF2 AT-hook motif nuclear-localize... Potri.008G058700
[exp]
7.07 0.8788
AT4G02400 U3 ribonucleoprotein (Utp) fam... Potri.014G128300
[exp]
7.41 0.9097
AT1G74260 PUR4 purine biosynthesis 4 (.1) Potri.008G058600
[exp]
8.36 0.8940

Potri.004G196400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.