Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27350 458 / 2e-157 OTLD1 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) AT5G67170 80 / 4e-16 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) AT3G62940 63 / 1e-10 Cysteine proteinases superfamily protein (.1.2.3) AT5G04250 56 / 4e-08 Cysteine proteinases superfamily protein (.1.2) AT3G22260 54 / 5e-08 Cysteine proteinases superfamily protein (.1.2.3) AT3G02070 52 / 2e-07 Cysteine proteinases superfamily protein (.1) AT5G03330 50 / 3e-06 Cysteine proteinases superfamily protein (.1.2) AT3G57810 42 / 0.0007 Cysteine proteinases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G160100 [exp] 737 / 0 AT2G27350 440 / 3e-150 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Potri.005G140500 [exp] 71 / 4e-13 AT5G67170 401 / 3e-139 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) Potri.016G019700 [exp] 62 / 7e-11 AT3G22260 333 / 5e-117 Cysteine proteinases superfamily protein (.1.2.3) Potri.014G134100 [exp] 62 / 2e-10 AT3G62940 338 / 9e-116 Cysteine proteinases superfamily protein (.1.2.3) Potri.006G021700 [exp] 56 / 1e-08 AT3G22260 347 / 2e-122 Cysteine proteinases superfamily protein (.1.2.3) Potri.014G140200 [exp] 54 / 4e-08 AT3G02070 358 / 2e-127 Cysteine proteinases superfamily protein (.1) Potri.008G036900 [exp] 53 / 6e-08 AT5G04250 239 / 4e-79 Cysteine proteinases superfamily protein (.1.2) Potri.016G050900 [exp] 54 / 1e-07 AT3G57810 301 / 5e-101 Cysteine proteinases superfamily protein (.1.2.3) Potri.010G225400 [exp] 54 / 2e-07 AT5G04250 360 / 2e-123 Cysteine proteinases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005193 [exp] 552 / 0 AT2G27350 549 / 0.0 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Lus10013303 [exp] 472 / 5e-163 AT2G27350 468 / 7e-162 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Lus10013302 [exp] 197 / 6e-59 AT2G27350 151 / 3e-42 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Lus10005939 [exp] 77 / 5e-15 AT3G62940 363 / 9e-126 Cysteine proteinases superfamily protein (.1.2.3) Lus10040897 [exp] 73 / 5e-14 AT3G62940 359 / 1e-124 Cysteine proteinases superfamily protein (.1.2.3) Lus10006255 [exp] 67 / 1e-11 AT5G67170 363 / 7e-124 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) Lus10010459 [exp] 60 / 6e-10 AT3G22260 338 / 7e-119 Cysteine proteinases superfamily protein (.1.2.3) Lus10037388 [exp] 57 / 1e-08 AT5G04250 239 / 6e-77 Cysteine proteinases superfamily protein (.1.2) Lus10023019 [exp] 53 / 3e-07 AT5G03330 325 / 4e-110 Cysteine proteinases superfamily protein (.1.2) Lus10001404 [exp] 53 / 4e-07 AT5G03330 327 / 9e-111 Cysteine proteinases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF02338 [poplar] [flax] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Potri.004G196800.4 pacid=42796512 polypeptide=Potri.004G196800.4.p locus=Potri.004G196800 ID=Potri.004G196800.4.v4.1 annot-version=v4.1 ATGACTCGTATTCTAGTTCAGCGAGGCAGTGGTTCTTCTTCGAACCAGAGCCGGGCAGGATCTTCTTCTTCGGCTGCTAGGCCAGACACACAGGGTACTA GCATCCTTCAGGCTGTTTCGACTGTGAAAGATGAGGATGTTGATGAGGAGGTGCAAGAGCAGGTAGTGGTCGATGAATTCTTGGAGAATGGTGGTAGTCA TGATAATAAAGTGGTAAAAAGTGACGAGCTTTTGATGGGAAGCACAAATGGTGACCGAAGTGACAGTTTAAATGATGAAATTGTTGATAACGATAAAGTG GGTAATGAGGAAGGGGTGGGATCAGGAGATTCGGTTAAAGGATTGGGTGGGCTGATTTTGGAGAGATCTCATGTGGAGAGTGAAGGTTCAAGTTCTGATC CTCCAGAGAACGGTAGTGGAAGCCCACAGCCGCCACCGCCTCCTGTGCCACCTCCAAAACCTGACCTAACAAACTCGAATTCAAGGAGATTTATATCAGG AACTTCAAATTCTGTGCGAATTGGATCATCTAGGAGAGCAGTCGCTTGGCCTGTTGTTTCGACAAGGTCTTCACCAACTGGATCACGGCCATCCTCTCCA AGGTCTCATGGTGAAATTGAGGGGTACAATAGTGCTGATGAGCAGAATCCTTGCTACGTTTCCTCTTATGATGATTTCGAAAGAGAGCGGCAGTTTGAGA TTGACATCAGACGGTCCAAAGGGTTAGAAGTCAAAAGAATGTTGGAGGATGGGAATTGTCTCTTCCGTGCTGTGACAGATCAAGTTTATGGGGATTCTGA AATGTATGATTTGGCCAGACAAATGTGCGTGGACTATATGGAAAGGGAAAGGGATCACTTTTCTCAATTCATTACTGAAGGTTTTACATCTTACTGTAAG AGGAAGAGAAGAGACAAGGTGTATGGAAACAATGTGGAGATCCAAGCTTTATCTGAAATGTACAATCGACCAATCCACATTTATTCCTATAGCACCGAAC CCATCAACATTGGGAGCTACAATACAGACACACCTCCCATACAGCTAAGCTATCATCATGGTAATCATTACAACTCTCTTGTCAACCCACGCCGCTCAAC AATTGGTGCAGGACTTGGTTTCAGCTGTCTTCAAGGGGCAAGTGTGGATAGAGATCAGGTCAAAGCTGCTATTAAAGCTCAACAAGACCAGCAGATTGAT AATGCACTTCTGGCTGAGGGGCAGTTTTACTCTGATCTTGAGGTTACTGAGAAGGAGATCGAACGCATGGTGATGGAAGCTTCTAGAGCTGAGTATCTTG CTGATAACAAGTTCAAACCACAACTTGGCCGTAAAGGATCTTCTACTTCTGGTGCAGAACCATCATCTTCTGGCGCTAGATCATCATCGGCCAGTGAGAC TACTAAGGTGGAAGGTGCAAGAGAACATGGCTCACAGGATACTGTCCTTAGCAGCAGTATGCAGATCGTGCTGTCAATGGGATTCAGTTACCTGCAAGCA ATCGAGGCCTACAGCATATTTGGTGATGATGTGGATTCCATGGTTTGTTACCTCGTGGAAACCAGCAGCAGCAGCAGCAGCAGACGCAAAGGCAAGGCAA CTGAATGA
AA sequence Show only first row Show all	>Potri.004G196800.4 pacid=42796512 polypeptide=Potri.004G196800.4.p locus=Potri.004G196800 ID=Potri.004G196800.4.v4.1 annot-version=v4.1 MTRILVQRGSGSSSNQSRAGSSSSAARPDTQGTSILQAVSTVKDEDVDEEVQEQVVVDEFLENGGSHDNKVVKSDELLMGSTNGDRSDSLNDEIVDNDKV GNEEGVGSGDSVKGLGGLILERSHVESEGSSSDPPENGSGSPQPPPPPVPPPKPDLTNSNSRRFISGTSNSVRIGSSRRAVAWPVVSTRSSPTGSRPSSP RSHGEIEGYNSADEQNPCYVSSYDDFERERQFEIDIRRSKGLEVKRMLEDGNCLFRAVTDQVYGDSEMYDLARQMCVDYMERERDHFSQFITEGFTSYCK RKRRDKVYGNNVEIQALSEMYNRPIHIYSYSTEPINIGSYNTDTPPIQLSYHHGNHYNSLVNPRRSTIGAGLGFSCLQGASVDRDQVKAAIKAQQDQQID NALLAEGQFYSDLEVTEKEIERMVMEASRAEYLADNKFKPQLGRKGSSTSGAEPSSSGARSSSASETTKVEGAREHGSQDTVLSSSMQIVLSMGFSYLQA IEAYSIFGDDVDSMVCYLVETSSSSSSRRKGKATE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Potri.004G196800 [exp]	0	1
AT3G17920			Outer arm dynein light chain 1...		Potri.012G045300 [exp]	1.00	0.8993
AT5G02770		MOS11	modifier of snc1, 11, unknown ...		Potri.016G082900 [exp]	1.73	0.8742
AT3G02065			P-loop containing nucleoside t...		Potri.014G140100 [exp]	2.00	0.8877
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Potri.016G089000 [exp]	6.32	0.8572
AT5G05550	Trihelix		sequence-specific DNA binding ...		Potri.008G071300 [exp]	7.34	0.8392
AT5G08550		ILP1	increased level of polyploidy1...		Potri.008G002600 [exp]	8.00	0.8700
AT4G27190			NB-ARC domain-containing disea...		Potri.001G426200 [exp]	8.48	0.8548
AT2G34930			disease resistance family prot...		Potri.012G034600 [exp]	8.77	0.8239
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Potri.005G053700 [exp]	10.24	0.8188	Pt-SWP.2
AT2G22010		RKP	related to KPC1 (.1.2)		Potri.005G083800 [exp]	11.53	0.8472

Compare expression of checked genes

Potri.004G196800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.